PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81901-81950 / 86044 show all
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8703
98.0010
99.7551
37.4155
17894365179244441
93.1818
ndellapenna-hhgaSNPtimap_l125_m1_e0het
98.8592
97.9689
99.7658
69.2090
17895371178954220
47.6190
jli-customSNPtimap_l100_m1_e0homalt
99.7965
99.6548
99.9386
56.4067
1789862178981111
100.0000
bgallagher-sentieonSNPtimap_l100_m1_e0homalt
99.7937
99.6659
99.9218
56.9365
1790060179001412
85.7143
ndellapenna-hhgaSNPtimap_l100_m1_e0homalt
99.7965
99.6659
99.9274
59.1233
1790060179001313
100.0000
ltrigg-rtg2SNPtimap_l100_m1_e0homalt
99.8049
99.6715
99.9386
57.1476
1790159179001111
100.0000
raldana-dualsentieonSNPtimap_l100_m1_e0homalt
99.8161
99.7049
99.9275
56.2318
1790753179071312
92.3077
ltrigg-rtg1SNPtimap_l100_m1_e0homalt
99.8050
99.7216
99.8885
59.4316
1791050179102020
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.4990
98.1160
98.8851
46.7540
1791534417916202197
97.5248
egarrison-hhgaSNPtimap_l100_m1_e0homalt
99.8579
99.7829
99.9331
60.2302
1792139179211212
100.0000
egarrison-hhgaINDELI1_5HG002complexvarhet
98.9830
98.5431
99.4269
55.1160
179242651786910326
25.2427
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.5379
98.1817
98.8967
47.5296
1792733217928200196
98.0000
hfeng-pmm1SNPtimap_l100_m1_e0homalt
99.8580
99.8385
99.8775
60.1505
1793129179312212
54.5455
hfeng-pmm3SNPtimap_l100_m1_e0homalt
99.8636
99.8497
99.8775
60.0521
1793327179332212
54.5455
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
93.4046
90.2930
96.7382
47.0617
17934192817795600351
58.5000
gduggal-snapplatSNPtimap_l125_m2_e1het
94.1854
93.9645
94.4074
84.4472
179351152179611064575
54.0414
eyeh-varpipeSNPtimap_l100_m1_e0homalt
99.8788
99.8719
99.8856
62.1452
1793723174642012
60.0000
hfeng-pmm2SNPtimap_l100_m1_e0homalt
99.8719
99.8775
99.8664
60.1447
1793822179382414
58.3333
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.3939
98.8110
96.0169
66.9230
1795021618586771551
71.4656
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8579
98.3570
99.3639
41.8770
1795930017963115109
94.7826
gduggal-bwavardSNP*func_cds*
99.3111
98.9862
99.6380
30.1556
17966184178926523
35.3846
ltrigg-rtg1INDELI1_5HG002complexvarhet
99.2372
98.7905
99.6881
51.9353
17969220172575428
51.8519
cchapple-customINDELI1_5HG002complexvarhet
99.2036
98.7960
99.6147
56.4110
17970219191307462
83.7838
gduggal-snapvardSNP*func_cds*
99.3360
99.0138
99.6603
29.3432
17971179178956123
37.7049
gduggal-snapfbSNPtimap_l100_m2_e1homalt
98.4714
97.1829
99.7946
68.9893
17973521179743721
56.7568
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.2695
91.8075
92.7362
81.6429
179751604178481398224
16.0229
gduggal-bwavardSNPtimap_l100_m2_e1homalt
98.5250
97.1937
99.8932
62.3163
17975519177731915
78.9474
asubramanian-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.4506
98.8726
98.0323
41.8823
17978205179853614
1.1080
jpowers-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50*
97.9586
98.9331
97.0031
50.6413
1798919418029557149
26.7504
raldana-dualsentieonINDELI1_5HG002complexvarhet
99.3867
98.9004
99.8777
56.7573
17989200179702213
59.0909
gduggal-snapfbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
90.7849
98.9826
83.8412
55.2905
17998185181033489157
4.4999
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2994
98.9826
99.6182
37.5156
17998185180046946
66.6667
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.8405
91.9659
97.9006
68.3752
1800615731800038615
3.8860
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.8405
91.9659
97.9006
68.3752
1800615731800038615
3.8860
gduggal-bwaplatSNP*func_cds*
99.4779
99.2121
99.7452
34.2475
1800714318007464
8.6957
mlin-fermikitSNP*func_cds*
99.4453
99.2617
99.6295
19.0809
18016134180166748
71.6418
gduggal-bwafbSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.5802
99.1091
98.0569
48.2748
180211621806635880
22.3464
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
93.9385
90.7361
97.3752
52.7808
18022184018957511394
77.1037
hfeng-pmm2INDELI1_5HG002complexvarhet
99.4756
99.0819
99.8724
57.6818
18022167180022311
47.8261
cchapple-customSNPtimap_l100_m2_e1homalt
98.7103
97.4640
99.9889
57.8502
180254691802022
100.0000
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.4319
99.1366
99.7290
37.0539
18026157180314928
57.1429
gduggal-bwafbSNPtimap_l125_m1_e0het
98.5889
98.6861
98.4920
74.2606
180262401802627677
27.8986
gduggal-snapplatSNP*func_cds*
99.4703
99.3223
99.6187
31.7106
1802712318027695
7.2464
hfeng-pmm2SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.4758
99.1531
99.8007
37.5709
1802915418026362
5.5556
hfeng-pmm1INDELI1_5HG002complexvarhet
99.4978
99.1313
99.8669
57.6162
18031158180122410
41.6667
astatham-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.5556
99.1696
99.9446
40.0259
1803215118029102
20.0000
egarrison-hhgaSNPtimap_l125_m1_e0het
99.2515
98.7299
99.7787
70.5410
18034232180344016
40.0000