PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81651-81700 / 86044 show all
ltrigg-rtg2SNPtvmap_sirenhomalt
99.8781
99.7912
99.9651
52.8102
17204361719864
66.6667
gduggal-snapfbSNP*segduphet
98.5769
99.3590
97.8069
92.1233
172061111721538616
4.1451
gduggal-bwaplatSNP*map_l150_m2_e1*
69.5020
53.4244
99.4224
91.0196
17208150021721210030
30.0000
ltrigg-rtg1SNPtvmap_sirenhomalt
99.8926
99.8318
99.9535
54.5447
17211291720585
62.5000
raldana-dualsentieonSNPtvmap_sirenhomalt
99.9013
99.8318
99.9710
52.2802
17211291720855
100.0000
astatham-gatkSNP*map_l125_m2_e0homalt
99.4712
99.0619
99.8839
66.1554
17212163172122016
80.0000
ndellapenna-hhgaSNP*segduphet
99.4196
99.4052
99.4339
89.3885
1721410317214984
4.0816
ltrigg-rtg1SNP*segduphet
98.6738
99.4225
97.9363
87.6799
17217100172273631
0.2755
jmaeng-gatkSNP*segduphet
97.9514
99.4283
96.5177
95.0045
1721899172126212
0.3221
hfeng-pmm3SNPtvmap_sirenhomalt
99.8898
99.8724
99.9071
55.8869
172182217215168
50.0000
eyeh-varpipeSNPtvmap_sirenhomalt
99.8859
99.8782
99.8937
58.0270
172192116916188
44.4444
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.7473
94.3151
97.2237
42.8173
17221103817930512480
93.7500
gduggal-bwafbSNP*map_l125_m2_e0homalt
99.4945
99.1137
99.8782
70.3251
17221154172212113
61.9048
hfeng-pmm1SNPtvmap_sirenhomalt
99.8956
99.8898
99.9014
56.0205
172211917219178
47.0588
hfeng-pmm2SNPtvmap_sirenhomalt
99.9014
99.9014
99.9014
56.1199
172231717220179
52.9412
ltrigg-rtg2SNP*segduphet
98.7596
99.4918
98.0380
86.6405
1722988172393453
0.8696
egarrison-hhgaSNPtiHG002compoundhet*
99.0004
98.5925
99.4116
34.5800
172322461723310275
73.5294
ckim-gatkSNP*segduphet
98.5246
99.5207
97.5483
94.9213
1723483172284335
1.1547
ghariani-varprowlSNP*segduphet
96.9575
99.5207
94.5230
93.2841
1723483172419995
0.5005
egarrison-hhgaSNP*segduphet
99.4921
99.5438
99.4404
89.6178
172387917238974
4.1237
rpoplin-dv42SNP*map_l125_m2_e0homalt
99.5066
99.2403
99.7743
69.1861
17243132172433938
97.4359
astatham-gatkSNPtiHG002compoundhet*
99.2746
98.6669
99.8899
35.7263
17245233172431918
94.7368
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.9095
98.1671
97.6533
71.1033
172463221731141617
4.0865
ckim-dragenSNP*map_l125_m2_e0homalt
99.5644
99.3151
99.8150
63.8939
17256119172613229
90.6250
dgrover-gatkSNP*map_l125_m2_e0homalt
99.6075
99.3209
99.8958
66.5083
17257118172571813
72.2222
rpoplin-dv42SNP*segduphet
99.7082
99.6651
99.7514
90.3344
172595817253433
6.9767
hfeng-pmm1SNP*segduphet
99.6248
99.6939
99.5558
89.5848
172645317258770
0.0000
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.0436
96.7173
99.4069
53.0396
17265586172621039
8.7379
gduggal-snapvardSNPtimap_l100_m1_e0homalt
97.9288
96.1470
99.7778
60.0714
17268692170673831
81.5789
hfeng-pmm2SNP*segduphet
99.5302
99.7344
99.3269
90.9417
1727146172651170
0.0000
hfeng-pmm3SNP*segduphet
99.5790
99.7344
99.4241
89.8527
1727146172651000
0.0000
raldana-dualsentieonSNP*segduphet
99.4013
99.7344
99.0704
90.7424
1727146172651621
0.6173
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0538
98.3322
99.7862
63.3791
1727529317266374
10.8108
jlack-gatkSNP*segduphet
97.2497
99.7806
94.8441
94.7945
1727938172739395
0.5325
ckim-dragenSNP*segduphet
97.6498
99.7863
95.6029
93.5624
1728037172857955
0.6289
cchapple-customSNP*segduphet
99.4246
99.7863
99.0654
93.2744
1728037172781635
3.0675
ghariani-varprowlSNP*map_l125_m2_e1homalt
99.1110
98.5626
99.6655
70.0625
17280252172805839
67.2414
jli-customSNP*segduphet
99.4076
99.8037
99.0146
89.8653
1728334172831722
1.1628
jpowers-varprowlSNP*map_l125_m2_e1homalt
99.1340
98.5911
99.6828
71.9295
17285247172855540
72.7273
jlack-gatkSNP*map_l125_m2_e1homalt
99.2279
98.5911
99.8729
66.9215
17285247172852216
72.7273
dgrover-gatkSNP*segduphet
99.5334
99.8152
99.2533
91.5277
1728532172791303
2.3077
bgallagher-sentieonSNP*segduphet
99.2648
99.8268
98.7091
91.1291
1728730172812262
0.8850
jmaeng-gatkSNPtiHG002compoundhet*
99.3792
98.9129
99.8498
36.3432
17288190172882622
84.6154
eyeh-varpipeSNP*segduphet
97.2199
99.8383
94.7354
91.1282
1728928168619377
0.7471
astatham-gatkSNPtimap_l150_m2_e0*
91.3750
84.3165
99.7232
79.9461
172953217172914827
56.2500
ndellapenna-hhgaSNP*map_l125_m2_e0homalt
99.7405
99.5626
99.9191
67.9668
1729976172991413
92.8571
cchapple-customSNPtiHG002compoundhet*
99.2669
98.9816
99.5539
35.4095
17300178174067864
82.0513
bgallagher-sentieonSNP*map_l125_m2_e0homalt
99.7291
99.5741
99.8845
66.0253
1730174173012015
75.0000
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.4227
98.4802
90.6863
72.2353
1730126717390178611
0.6159
ltrigg-rtg2SNP*map_l125_m2_e0homalt
99.7578
99.5741
99.9422
65.9494
173017417302109
90.0000