PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81601-81650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8251 | 99.7031 | 99.9475 | 55.2981 | 17126 | 51 | 17123 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6944 | 99.7089 | 99.6800 | 57.2704 | 17127 | 50 | 17130 | 55 | 30 | 54.5455 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8455 | 99.7089 | 99.9825 | 55.0685 | 17127 | 50 | 17124 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | homalt | 99.2238 | 98.5842 | 99.8717 | 66.9110 | 17129 | 246 | 17129 | 22 | 16 | 72.7273 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8513 | 99.7206 | 99.9825 | 55.1444 | 17129 | 48 | 17126 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | SNP | * | map_l125_m2_e0 | homalt | 99.1290 | 98.5842 | 99.6799 | 71.9156 | 17129 | 246 | 17129 | 55 | 40 | 72.7273 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2261 | 96.1390 | 98.3380 | 67.3449 | 17131 | 688 | 16745 | 283 | 223 | 78.7986 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.2565 | 97.5239 | 96.9905 | 69.1218 | 17133 | 435 | 16952 | 526 | 189 | 35.9316 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8311 | 99.7438 | 99.9184 | 52.5299 | 17133 | 44 | 17145 | 14 | 9 | 64.2857 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8485 | 99.7730 | 99.9242 | 55.1449 | 17138 | 39 | 17136 | 13 | 8 | 61.5385 | |
| gduggal-bwafb | SNP | tv | map_siren | homalt | 99.6686 | 99.4490 | 99.8893 | 56.7363 | 17145 | 95 | 17145 | 19 | 11 | 57.8947 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.4920 | 97.0234 | 97.9652 | 58.1135 | 17145 | 526 | 17140 | 356 | 338 | 94.9438 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.2517 | 96.2231 | 78.1528 | 59.6097 | 17146 | 673 | 18083 | 5055 | 4861 | 96.1622 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1456 | 97.0290 | 99.2882 | 49.3199 | 17146 | 525 | 17018 | 122 | 80 | 65.5738 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1456 | 97.0290 | 99.2882 | 49.3199 | 17146 | 525 | 17018 | 122 | 80 | 65.5738 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | * | 98.5659 | 98.1119 | 99.0241 | 34.3630 | 17148 | 330 | 17148 | 169 | 140 | 82.8402 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | * | 85.8670 | 98.1291 | 76.3290 | 43.9481 | 17151 | 327 | 17345 | 5379 | 340 | 6.3209 | |
| qzeng-custom | SNP | ti | HG002compoundhet | * | 98.4045 | 98.1577 | 98.6526 | 40.8633 | 17156 | 322 | 17719 | 242 | 86 | 35.5372 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7522 | 99.8777 | 99.6270 | 52.6879 | 17156 | 21 | 16826 | 63 | 23 | 36.5079 | |
| asubramanian-gatk | SNP | tv | map_siren | het | 74.9187 | 59.9671 | 99.8022 | 78.0195 | 17156 | 11453 | 17153 | 34 | 10 | 29.4118 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4986 | 96.2849 | 98.7434 | 52.0928 | 17157 | 662 | 43140 | 549 | 461 | 83.9709 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8341 | 99.8836 | 99.7848 | 57.0872 | 17157 | 20 | 17153 | 37 | 8 | 21.6216 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9243 | 99.8836 | 99.9650 | 55.5651 | 17157 | 20 | 17153 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5160 | 97.0969 | 97.9388 | 58.0884 | 17158 | 513 | 17153 | 361 | 342 | 94.7368 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5160 | 97.0969 | 97.9388 | 58.0884 | 17158 | 513 | 17153 | 361 | 342 | 94.7368 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8835 | 99.8894 | 99.8776 | 53.9498 | 17158 | 19 | 17135 | 21 | 9 | 42.8571 | |
| astatham-gatk | SNP | tv | map_siren | homalt | 99.7239 | 99.5244 | 99.9243 | 52.7924 | 17158 | 82 | 17155 | 13 | 10 | 76.9231 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9214 | 99.9010 | 99.9417 | 55.7201 | 17160 | 17 | 17156 | 10 | 8 | 80.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9156 | 99.9069 | 99.9243 | 55.5895 | 17161 | 16 | 17157 | 13 | 8 | 61.5385 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8953 | 99.9243 | 99.8662 | 56.6428 | 17164 | 13 | 17169 | 23 | 7 | 30.4348 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | het | 77.5988 | 89.9303 | 68.2413 | 78.1425 | 17165 | 1922 | 17046 | 7933 | 1721 | 21.6942 | |
| ckim-dragen | SNP | tv | map_siren | homalt | 99.7415 | 99.5824 | 99.9011 | 51.8437 | 17168 | 72 | 17170 | 17 | 15 | 88.2353 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.8371 | 96.1907 | 93.5210 | 57.8026 | 17171 | 680 | 17740 | 1229 | 505 | 41.0903 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | homalt | 99.7328 | 99.5998 | 99.8662 | 55.9755 | 17171 | 69 | 17169 | 23 | 21 | 91.3043 | |
| dgrover-gatk | SNP | tv | map_siren | homalt | 99.7938 | 99.6520 | 99.9360 | 53.0780 | 17180 | 60 | 17177 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | * | 81.2147 | 68.6414 | 99.4272 | 84.5184 | 17183 | 7850 | 17184 | 99 | 19 | 19.1919 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6682 | 96.2747 | 75.5590 | 61.4479 | 17186 | 665 | 17402 | 5629 | 124 | 2.2029 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5920 | 97.2554 | 97.9309 | 57.6692 | 17186 | 485 | 17181 | 363 | 345 | 95.0413 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| jli-custom | SNP | tv | map_siren | homalt | 99.8403 | 99.7332 | 99.9477 | 52.3546 | 17194 | 46 | 17191 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6405 | 97.3120 | 97.9712 | 57.8582 | 17196 | 475 | 17191 | 356 | 338 | 94.9438 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| egarrison-hhga | SNP | tv | map_siren | homalt | 99.8636 | 99.7854 | 99.9419 | 55.8765 | 17203 | 37 | 17203 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| bgallagher-sentieon | SNP | tv | map_siren | homalt | 99.8607 | 99.7854 | 99.9361 | 52.7521 | 17203 | 37 | 17200 | 11 | 9 | 81.8182 | |