PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81601-81650 / 86044 show all
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8251
99.7031
99.9475
55.2981
17126511712396
66.6667
gduggal-bwafbSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6944
99.7089
99.6800
57.2704
1712750171305530
54.5455
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8455
99.7089
99.9825
55.0685
17127501712432
66.6667
jlack-gatkSNP*map_l125_m2_e0homalt
99.2238
98.5842
99.8717
66.9110
17129246171292216
72.7273
hfeng-pmm3SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8513
99.7206
99.9825
55.1444
17129481712632
66.6667
jpowers-varprowlSNP*map_l125_m2_e0homalt
99.1290
98.5842
99.6799
71.9156
17129246171295540
72.7273
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.2261
96.1390
98.3380
67.3449
1713168816745283223
78.7986
gduggal-bwavardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.2565
97.5239
96.9905
69.1218
1713343516952526189
35.9316
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8311
99.7438
99.9184
52.5299
171334417145149
64.2857
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8485
99.7730
99.9242
55.1449
171383917136138
61.5385
gduggal-bwafbSNPtvmap_sirenhomalt
99.6686
99.4490
99.8893
56.7363
1714595171451911
57.8947
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.4920
97.0234
97.9652
58.1135
1714552617140356338
94.9438
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.2517
96.2231
78.1528
59.6097
171466731808350554861
96.1622
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1456
97.0290
99.2882
49.3199
171465251701812280
65.5738
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1456
97.0290
99.2882
49.3199
171465251701812280
65.5738
ndellapenna-hhgaSNPtiHG002compoundhet*
98.5659
98.1119
99.0241
34.3630
1714833017148169140
82.8402
gduggal-snapfbSNPtiHG002compoundhet*
85.8670
98.1291
76.3290
43.9481
17151327173455379340
6.3209
qzeng-customSNPtiHG002compoundhet*
98.4045
98.1577
98.6526
40.8633
171563221771924286
35.5372
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7522
99.8777
99.6270
52.6879
1715621168266323
36.5079
asubramanian-gatkSNPtvmap_sirenhet
74.9187
59.9671
99.8022
78.0195
1715611453171533410
29.4118
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.4986
96.2849
98.7434
52.0928
1715766243140549461
83.9709
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8341
99.8836
99.7848
57.0872
171572017153378
21.6216
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9243
99.8836
99.9650
55.5651
17157201715365
83.3333
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5160
97.0969
97.9388
58.0884
1715851317153361342
94.7368
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5160
97.0969
97.9388
58.0884
1715851317153361342
94.7368
cchapple-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8835
99.8894
99.8776
53.9498
171581917135219
42.8571
astatham-gatkSNPtvmap_sirenhomalt
99.7239
99.5244
99.9243
52.7924
1715882171551310
76.9231
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9214
99.9010
99.9417
55.7201
171601717156108
80.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9156
99.9069
99.9243
55.5895
171611617157138
61.5385
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8953
99.9243
99.8662
56.6428
171641317169237
30.4348
anovak-vgSNPtimap_l125_m2_e1het
77.5988
89.9303
68.2413
78.1425
1716519221704679331721
21.6942
ckim-dragenSNPtvmap_sirenhomalt
99.7415
99.5824
99.9011
51.8437
1716872171701715
88.2353
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8371
96.1907
93.5210
57.8026
17171680177401229505
41.0903
gduggal-snapplatSNPtimap_l100_m2_e1homalt
96.2554
92.8463
99.9243
62.6415
171711323171541313
100.0000
rpoplin-dv42SNPtvmap_sirenhomalt
99.7328
99.5998
99.8662
55.9755
1717169171692321
91.3043
dgrover-gatkSNPtvmap_sirenhomalt
99.7938
99.6520
99.9360
53.0780
171806017177119
81.8182
gduggal-bwaplatSNPtvmap_l100_m2_e0*
81.2147
68.6414
99.4272
84.5184
171837850171849919
19.1919
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
84.6682
96.2747
75.5590
61.4479
17186665174025629124
2.2029
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5920
97.2554
97.9309
57.6692
1718648517181363345
95.0413
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5920
97.2554
97.9309
57.6692
1718648517181363345
95.0413
ndellapenna-hhgaSNPtvmap_sirenhomalt
99.8287
99.7274
99.9303
55.1755
1719347171931210
83.3333
jli-customSNPtvmap_sirenhomalt
99.8403
99.7332
99.9477
52.3546
17194461719199
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6405
97.3120
97.9712
57.8582
1719647517191356338
94.9438
gduggal-bwafbSNP*segduphet
98.4151
99.3244
97.5223
92.8812
172001171720043712
2.7460
egarrison-hhgaSNPtvmap_sirenhomalt
99.8636
99.7854
99.9419
55.8765
172033717203109
90.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0590
97.3516
98.7767
53.3290
1720346817199213200
93.8967
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0590
97.3516
98.7767
53.3290
1720346817199213200
93.8967
bgallagher-sentieonSNPtvmap_sirenhomalt
99.8607
99.7854
99.9361
52.7521
172033717200119
81.8182