PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81551-81600 / 86044 show all
ciseli-customSNP*segduphet
95.5747
98.0713
93.2020
92.0353
1698333416891123233
2.6786
gduggal-snapplatSNPtimap_l100_m2_e0homalt
96.2308
92.8014
99.9235
62.6446
169911318169741313
100.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.2413
93.5539
90.9650
64.4972
1699511711699516881649
97.6896
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
85.8608
77.6154
96.0663
66.4017
16997490216973695593
85.3237
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
85.9015
77.6154
96.1682
66.3211
16997490216966676597
88.3136
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.8647
96.7839
94.9628
65.9014
1700356517476927381
41.1003
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3219
95.4262
99.2945
64.0832
170048151703012144
36.3636
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.6106
86.8839
88.3495
88.3802
170112568170702251184
8.1741
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.6106
86.8839
88.3495
88.3802
170112568170702251184
8.1741
astatham-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5088
99.0743
99.9471
55.8025
170181591701596
66.6667
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.2029
96.8864
99.5557
62.5968
1702154717030764
5.2632
gduggal-snapplatSNP*map_l125_m0_e0*
91.0834
87.8360
94.5802
84.8287
17027235817032976546
55.9426
ckim-vqsrSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.5470
99.1558
99.9413
57.3410
1703214517028108
80.0000
ciseli-customSNPtimap_l100_m0_e0*
82.2845
78.2555
86.7509
73.7443
170374734170242600753
28.9615
ltrigg-rtg1SNPtiHG002compoundhet*
98.6394
97.4883
99.8180
33.8383
17039439170033112
38.7097
gduggal-snapfbINDELI6_15**
76.3979
68.7024
86.0349
35.3787
1705477691778628872798
96.9172
gduggal-snapplatSNP*segduphet
98.6817
98.5044
98.8598
94.8279
170582591708019717
8.6294
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1803
96.5537
97.8151
57.7486
1706260917057381365
95.8005
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1803
96.5537
97.8151
57.7486
1706260917057381365
95.8005
ckim-vqsrSNP*segduphet
98.9505
98.5621
99.3421
95.0542
17068249170621134
3.5398
jpowers-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.3080
99.3771
99.2391
58.1058
170701071708513166
50.3817
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0556
96.6386
97.4762
58.8481
1707759417071442432
97.7376
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.6952
95.8752
97.5293
67.9232
1708473516698423393
92.9078
gduggal-bwaplatSNP*map_l100_m2_e1homalt
76.1334
61.4729
99.9766
72.2874
17087107091707544
100.0000
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.7164
95.8976
79.1397
59.1322
170887311843448594632
95.3283
gduggal-bwavardSNP*map_l125_m2_e1homalt
98.6568
97.4789
99.8635
68.6528
17090442168282318
78.2609
qzeng-customSNP*segduphet
98.3153
98.7007
97.9329
93.6755
170922251696135811
3.0726
gduggal-snapvardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.0446
97.3019
89.1441
72.7080
17094474169572065141
6.8281
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6848
99.5401
99.8300
56.5387
170987917030299
31.0345
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1535
96.7800
97.5299
57.5288
1710256917097433414
95.6120
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1535
96.7800
97.5299
57.5288
1710256917097433414
95.6120
jpowers-varprowlSNP*segduphet
97.3794
98.7931
96.0056
92.7629
17108209171137126
0.8427
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7610
99.6391
99.8833
55.2713
1711562171162015
75.0000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
98.4684
99.6391
97.3249
58.7610
17115621713647162
13.1635
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1966
96.0492
98.3718
68.1010
1711570416736277229
82.6715
jlack-gatkSNPtvmap_sirenhomalt
99.5956
99.2807
99.9124
53.4780
17116124171131510
66.6667
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.2445
96.0604
98.4581
67.5236
1711770216730262221
84.3511
ghariani-varprowlSNPtvmap_sirenhomalt
99.3038
99.2865
99.3211
57.8404
171171231711711771
60.6838
gduggal-snapfbSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.2980
99.6507
98.9479
58.0370
17117601711618235
19.2308
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7872
99.6565
99.9183
57.2121
171185917114148
57.1429
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6623
99.9299
57.3191
171195817115125
41.6667
ckim-vqsrSNPtiHG002compoundhet*
98.9109
97.9517
99.8891
36.4634
17120358171201917
89.4737
hfeng-pmm2SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8222
99.6798
99.9650
55.3292
17122551711962
33.3333
jpowers-varprowlSNPtvmap_sirenhomalt
99.3790
99.3213
99.4367
59.4375
17123117171239772
74.2268
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6914
99.9417
52.6220
171245317138107
70.0000
ghariani-varprowlSNP*map_l125_m2_e0homalt
99.1058
98.5554
99.6624
70.0500
17124251171245839
67.2414
gduggal-snapplatSNPtimap_l125_m1_e0het
93.9862
93.7479
94.2256
83.3757
171241142171501051571
54.3292
egarrison-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7960
99.6973
99.8950
55.4424
1712552171261814
77.7778