PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81301-81350 / 86044 show all
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9003
95.1929
90.7155
79.9240
16159816161901657193
11.6476
anovak-vgSNP*map_l125_m0_e0*
79.0837
83.3789
75.2094
80.8664
1616332221598252681460
27.7145
jpowers-varprowlSNPtvmap_l125_m2_e1*
97.1894
97.0523
97.3269
78.1843
1616649116166444120
27.0270
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.2406
42.6785
64.1003
68.1692
161762172619332108274241
39.1706
ltrigg-rtg2SNPtvmap_l125_m2_e0*
98.9542
98.1260
99.7965
61.0321
1618030916180335
15.1515
gduggal-snapplatSNPtvmap_sirenhomalt
96.8214
93.9095
99.9197
58.2133
16190105016181135
38.4615
ckim-vqsrSNP*map_l150_m2_e1*
66.6447
50.3105
98.6844
91.5888
1620516005162022163
1.3889
gduggal-snapfbSNPtvmap_l125_m2_e1*
96.8978
97.3224
96.4768
75.8806
1621144616211592214
36.1486
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
96.2180
98.6853
93.8711
58.0279
162132163487522771868
82.0378
gduggal-snapfbSNP*map_l125_m1_e0homalt
97.7543
95.9184
99.6620
74.9969
16215690162165521
38.1818
gduggal-snapfbINDEL*HG002compoundhethetalt
76.0060
64.4003
92.7141
74.7872
1621689645739451378
83.8137
cchapple-customSNPtvmap_l125_m2_e1*
96.6306
97.3885
95.8843
75.9688
1622243516215696117
16.8103
mlin-fermikitSNPtiHG002compoundhet*
93.7043
92.8195
94.6061
36.5228
16223125516224925739
79.8919
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
56.4553
51.6684
62.2197
60.5704
16228151801620798419672
98.2827
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
56.4553
51.6684
62.2197
60.5704
16228151801620798419672
98.2827
asubramanian-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3035
98.8131
99.7988
59.4317
1623419516370333
9.0909
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.2884
98.8435
99.7372
57.4242
16239190163214329
67.4419
ltrigg-rtg1SNPtvmap_l125_m2_e0*
99.1334
98.5142
99.7605
64.2909
1624424516244399
23.0769
gduggal-snapfbINDEL**hetalt
71.6867
64.3698
80.8803
78.7792
16245899257701364830
60.8504
gduggal-snapvardSNP*map_l125_m1_e0homalt
97.9102
96.1077
99.7817
66.1808
16247658159993527
77.1429
ndellapenna-hhgaSNPtvmap_l125_m2_e0*
99.1430
98.5687
99.7239
69.3029
16253236162534522
48.8889
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.0207
91.2790
79.5656
57.4207
1626515541597241024011
97.7816
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.7947
99.0383
98.5524
55.6705
162711583138446149
10.6291
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.3072
99.0383
99.5775
51.0793
1627115835588151137
90.7285
ghariani-varprowlSNPtvmap_l125_m2_e0*
97.4321
98.7143
96.1827
78.0708
1627721216277646117
18.1115
ciseli-customSNPtimap_l100_m1_e0homalt
90.9965
90.6459
91.3498
59.1340
1628016801624215381227
79.7789
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.4473
99.1113
99.7856
56.2027
16283146162903523
65.7143
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.4987
99.1235
99.8768
54.4784
1628514416208207
35.0000
jpowers-varprowlSNPtiHG002compoundhet*
92.4932
93.2258
91.7721
42.7151
162941184163961470904
61.4966
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
jlack-gatkSNPtvmap_l125_m2_e0*
95.1584
98.8841
91.7032
81.2684
1630518416303147590
6.1017
gduggal-bwafbSNPtvmap_l125_m2_e0*
98.6658
98.8902
98.4424
74.7627
163061831630625851
19.7674
gduggal-bwavardSNPtvmap_l125_m2_e1*
95.0540
97.9288
92.3431
80.3827
1631234516257134874
5.4896
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.5363
99.2878
99.7860
56.6980
16312117163183521
60.0000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3667
99.3548
95.4567
60.8139
1632310616325777514
66.1519
rpoplin-dv42SNPtvmap_l125_m2_e0*
99.1468
99.0175
99.2763
70.8786
163271621632511970
58.8235
ciseli-customINDELI1_5HG002complexvarhet
88.5454
89.7735
87.3504
57.1664
1632818601635223681692
71.4527
egarrison-hhgaSNPtvmap_l125_m2_e0*
99.4065
99.0357
99.7800
70.1050
16330159163303617
47.2222
ckim-dragenSNPtvmap_l125_m2_e0*
98.4063
99.0539
97.7671
75.5410
163331561633237339
10.4558
jli-customSNPtvmap_l125_m2_e0*
99.2648
99.0782
99.4521
69.0688
16337152163369026
28.8889
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7102
99.4704
99.9511
57.5377
16342871634081
12.5000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7041
99.4765
99.9327
57.5361
163438616341114
36.3636
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.6346
99.4826
99.7870
59.5165
1634485173303722
59.4595
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.3750
99.4887
95.3492
61.3437
163458416381799639
79.9750
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
90.6005
89.5230
91.7043
43.8461
1634619131707915451043
67.5081
ltrigg-rtg2SNPtvmap_l125_m2_e1*
98.9559
98.1449
99.7803
61.1285
1634830916353365
13.8889
cchapple-customSNP*map_l125_m1_e0homalt
98.3281
96.7169
99.9939
61.4654
163505551634511
100.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7347
99.5374
99.9328
57.9303
163537616352114
36.3636