PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81251-81300 / 86044 show all
hfeng-pmm2SNPtvmap_l100_m2_e1het
99.2765
99.4541
99.0995
70.8119
15851871584714412
8.3333
anovak-vgSNPtimap_l100_m2_e1homalt
92.0569
85.7251
99.3985
60.4006
158542640157009590
94.7368
hfeng-pmm3SNPtvmap_l100_m2_e1het
99.5354
99.4855
99.5854
67.1367
158568215852665
7.5758
rpoplin-dv42SNPtvmap_l125_m1_e0*
99.1341
99.0072
99.2613
68.8884
158571591585511869
58.4746
egarrison-hhgaSNPtvmap_l125_m1_e0*
99.3983
99.0135
99.7861
68.1855
15858158158583417
50.0000
ckim-dragenSNPtvmap_l125_m1_e0*
98.3749
99.0322
97.7263
73.5955
158611551586036938
10.2981
dgrover-gatkSNPtvmap_l100_m2_e1het
99.3081
99.5294
99.0878
72.9526
15863751585914624
16.4384
jli-customSNPtvmap_l125_m1_e0*
99.2462
99.0572
99.4359
66.9313
15865151158649026
28.8889
bgallagher-sentieonSNPtvmap_l100_m2_e1het
99.1255
99.5859
98.6693
71.4407
15872661586821425
11.6822
gduggal-bwaplatSNP*map_l150_m1_e0*
68.1780
51.8769
99.4179
90.5327
1587914730158839329
31.1828
eyeh-varpipeSNPtvmap_l100_m2_e1het
96.0176
99.7490
92.5553
72.3251
158984015702126316
1.2668
raldana-dualsentieonSNPtvmap_l125_m1_e0*
99.1952
99.2757
99.1147
70.0226
15900116158981424
2.8169
dgrover-gatkSNPtvmap_l125_m1_e0*
99.2231
99.2882
99.1581
73.2603
159021141590013527
20.0000
hfeng-pmm1SNPtvmap_l125_m1_e0*
99.4714
99.2945
99.6491
69.3117
15903113159015616
28.5714
ciseli-customINDELD6_15**
61.9102
60.9636
62.8867
53.8982
15906101851593894066255
66.5001
hfeng-pmm2SNPtvmap_l125_m1_e0*
99.2768
99.4318
99.1223
72.3649
15925911592314116
11.3475
hfeng-pmm3SNPtvmap_l125_m1_e0*
99.5034
99.4568
99.5500
69.7161
1592987159277210
13.8889
bgallagher-sentieonSNPtvmap_l125_m1_e0*
99.1503
99.4630
98.8396
71.8727
15930861592818728
14.9733
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
97.3624
95.4205
99.3850
51.9079
159407651632110199
98.0198
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3624
95.4205
99.3850
51.9079
159407651632110199
98.0198
ckim-vqsrSNPtimap_l125_m1_e0*
70.1902
54.3480
99.0678
87.5048
1594313392159411504
2.6667
gduggal-snapvardINDELD6_15**
65.0191
61.1567
69.4022
48.8917
15957101351603470695706
80.7186
ciseli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
66.3810
65.0448
67.7731
41.7349
1596285781590575635364
70.9242
ckim-isaacSNP*map_l100_m2_e0homalt
73.4369
58.0387
99.9562
58.2196
15974115491597477
100.0000
eyeh-varpipeSNPtvmap_l125_m1_e0*
97.8643
99.7502
96.0484
73.9143
15976401587265317
2.6034
gduggal-snapvardSNPtvmap_l125_m2_e0*
93.1565
96.9192
89.6752
79.7699
15981508159291834123
6.7067
ckim-vqsrSNP*map_l150_m2_e0*
66.5265
50.1758
98.6845
91.5836
1598215870159792133
1.4085
jpowers-varprowlSNPtvmap_l125_m2_e0*
97.1791
97.0465
97.3121
78.1370
1600248716002442119
26.9231
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
76.1646
71.9865
80.8576
48.0795
1601762331653739153818
97.5223
anovak-vgINDELD6_15**
67.2100
61.4480
74.1646
48.0426
16033100591620256444329
76.7009
gduggal-snapfbSNPtvmap_l125_m2_e0*
96.8780
97.2952
96.4644
75.8291
1604344616043588214
36.3946
gduggal-snapplatSNPtiHG002compoundhet*
85.7906
91.8526
80.4793
50.9850
160541424161203910442
11.3043
cchapple-customSNPtvmap_l125_m2_e0*
96.6110
97.3619
95.8717
75.9113
1605443516047691117
16.9320
gduggal-bwaplatSNPtiHG002compoundhet*
89.0817
91.8641
86.4629
42.2720
160561422161212524263
10.4200
mlin-fermikitINDEL*HG002compoundhethetalt
77.7377
63.7887
99.4948
53.3255
160629118161508281
98.7805
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.5066
97.9670
99.0521
55.3862
1609533416093154147
95.4545
mlin-fermikitINDEL**hetalt
77.7361
63.8348
99.3774
60.1130
16110912716282102100
98.0392
gduggal-snapplatINDELD1_5HG002complexvarhet
82.2897
77.5921
87.5928
61.7499
161124653188782674302
11.2939
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
54.6126
50.3907
59.6067
38.4218
1612115871225511528211968
78.3144
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
97.4564
98.1618
96.7610
58.8376
1612730216132540515
95.3704
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.7954
98.2348
99.3624
57.2660
161392901620810451
49.0385
gduggal-snapvardSNPtvmap_l125_m2_e1*
93.1692
96.8962
89.7183
79.8287
16140517160821843125
6.7824
ckim-isaacSNP*map_l100_m2_e1homalt
73.4703
58.0803
99.9567
58.1884
16144116521614477
100.0000
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
98.6542
98.2774
99.0338
56.4448
161462831609315770
44.5860
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
69.0612
65.8068
72.6543
37.5809
1614983911674163014632
73.5121
gduggal-bwavardSNPtvmap_l125_m2_e0*
95.0420
97.9501
92.3015
80.3208
1615133816102134373
5.4356
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.2224
95.1576
99.3788
72.1373
161538221615810153
52.4752
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.2224
95.1576
99.3788
72.1373
161538221615810153
52.4752