PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
81151-81200 / 86044 show all
rpoplin-dv42INDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.4805
97.1646
97.7985
57.9258
1559245515593351340
96.8661
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.6332
88.2406
95.2970
51.5896
15593207816717825785
95.1515
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.6332
88.2406
95.2970
51.5896
15593207816717825785
95.1515
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1965
97.0144
99.4078
64.7466
15597480156119372
77.4194
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1965
97.0144
99.4078
64.7466
15597480156119372
77.4194
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.6853
98.9657
98.4065
63.1662
1559716315439250223
89.2000
egarrison-hhgaSNPtvmap_l100_m2_e0het
99.3093
98.8845
99.7379
65.3478
15601176156014113
31.7073
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2099
97.0828
99.3634
67.3172
156084691560910084
84.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2099
97.0828
99.3634
67.3172
156084691560910084
84.0000
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.7068
91.9529
99.7804
63.8066
156091366154473416
47.0588
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.7068
91.9529
99.7804
63.8066
156091366154473416
47.0588
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4289
93.4391
99.6164
40.1880
156091096158436161
100.0000
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6849
97.2767
98.0965
60.4473
1561043715615303282
93.0693
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4536
93.4690
99.6351
39.9267
156141091158385857
98.2759
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4536
93.4690
99.6351
39.9267
156141091158385857
98.2759
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
82.7904
78.6275
87.4187
53.2630
156174245162592340997
42.6068
ltrigg-rtg2SNPtvmap_l100_m2_e1het
98.8079
98.0299
99.5983
53.4836
1562431415620632
3.1746
gduggal-bwafbSNPtvmap_l100_m2_e0het
98.4689
99.0556
97.8891
72.5475
156281491562833748
14.2433
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.4417
95.1488
89.8844
58.8124
15632797156301759720
40.9323
cchapple-customSNPtvmap_l100_m2_e1het
96.3138
98.0926
94.5983
75.6213
1563430415674895134
14.9721
cchapple-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.0126
97.4325
98.5996
53.5616
1563541216687237217
91.5612
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.8985
99.2195
98.5796
63.0301
1563712315477223202
90.5830
jli-customSNPtvmap_l100_m2_e0het
99.2133
99.1190
99.3078
65.8320
156381391563710924
22.0183
gduggal-bwavardSNPtvmap_l100_m2_e1het
94.4719
98.1303
91.0764
80.3818
1564029815585152790
5.8939
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50het
99.2504
99.2513
99.2495
62.6333
156421181547211778
66.6667
ckim-dragenSNPtvmap_l100_m2_e0het
98.0513
99.1697
96.9579
75.2085
156461311564949132
6.5173
rpoplin-dv42SNPtvmap_l100_m2_e0het
99.1350
99.1697
99.1004
66.6194
156461311564214259
41.5493
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.7059
93.6606
99.9559
40.2439
1564610591586976
85.7143
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.7059
93.6606
99.9559
40.2439
1564610591586976
85.7143
eyeh-varpipeINDELI6_15**
71.2994
63.0343
82.0590
39.8519
1564791761573434403408
99.0698
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.8361
99.3147
98.3621
62.3698
1565210815494258231
89.5349
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9118
99.3147
98.5122
62.5969
1565210815494234208
88.8889
jmaeng-gatkSNPtimap_l125_m2_e1het
88.9909
82.0139
97.2654
86.9813
1565434331565044039
8.8636
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9340
99.3274
98.5437
62.8374
1565410615496229203
88.6463
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.4067
97.3876
99.4474
67.5648
15657420156588773
83.9080
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4067
97.3876
99.4474
67.5648
15657420156588773
83.9080
gduggal-snapplatSNP*map_l125_m2_e1homalt
94.3221
89.3053
99.9361
69.8871
15657187515646109
90.0000
hfeng-pmm1SNPtvmap_l100_m2_e0het
99.4695
99.2394
99.7006
66.3242
15657120156534712
25.5319
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9501
99.4036
98.5008
62.9678
156669415506236204
86.4407
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
93.7863
0.0000
0.0000
156671038000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
93.7863
0.0000
0.0000
156671038000
jlack-gatkSNPtvmap_l100_m2_e0het
94.4020
99.3218
89.9466
81.2769
1567010715666175190
5.1399
ghariani-varprowlSNPtvmap_l100_m2_e0het
97.2146
99.3218
95.1950
76.6930
156701071567179198
12.3894
ltrigg-rtg1SNPtvmap_l100_m2_e1het
98.9548
98.3185
99.5995
57.2767
1567026815666635
7.9365
raldana-dualsentieonSNPtvmap_l100_m2_e0het
99.1552
99.3345
98.9766
69.6214
15672105156681621
0.6173
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.4673
97.4995
99.4544
67.8523
15675402156768670
81.3953
ckim-dragenINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9422
97.7317
98.1536
61.1398
1568336415682295284
96.2712
ckim-gatkSNPtimap_l125_m2_e1het
89.1406
82.1659
97.4093
86.6958
1568334041567941741
9.8321