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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
80751-80800 / 86044 show all
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4153
95.0558
97.8143
50.9442
1405473114052314309
98.4076
astatham-gatkSNPtvmap_l125_m2_e1*
91.4416
84.4450
99.7023
76.7879
140662591140644214
33.3333
qzeng-customSNPtimap_l150_m2_e0*
80.3185
68.5989
96.8676
87.0371
14071644113978452386
85.3982
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.9444
77.0743
97.1216
57.5074
14073418614070417292
70.0240
rpoplin-dv42SNP*HG002compoundhethet
99.5408
99.3864
99.6957
45.1283
1409187140874332
74.4186
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0660
95.3263
98.8704
48.8773
1409469114092161153
95.0311
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.1130
95.4143
96.8220
50.6721
1410767814106463453
97.8402
qzeng-customSNPtimap_l100_m1_e0homalt
87.7858
78.5523
99.4792
55.9352
141083852139447371
97.2603
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.1094
95.4346
98.8440
49.6543
1411067514108165157
95.1515
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.6766
79.8823
85.6735
55.5568
1411635551411923612322
98.3482
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.6766
79.8823
85.6735
55.5568
1411635551411923612322
98.3482
mlin-fermikitSNP*map_l150_m2_e1*
57.9744
43.8280
85.6051
66.1929
14117180931411223732083
87.7792
jlack-gatkSNP*HG002compoundhethet
99.3003
99.6050
98.9974
47.5779
14122561412014330
20.9790
jli-customSNP*HG002compoundhethet
99.6122
99.6614
99.5631
45.6634
1413048141286224
38.7097
ckim-dragenSNP*HG002compoundhethet
99.7322
99.6967
99.7677
46.4046
141354314173338
24.2424
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2519
95.6239
98.9362
48.5377
1413864714136152147
96.7105
bgallagher-sentieonSNP*HG002compoundhethet
99.7460
99.7320
99.7601
45.7386
1414038141383411
32.3529
dgrover-gatkSNP*HG002compoundhethet
99.7355
99.7390
99.7320
46.0622
1414137141393824
63.1579
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.7223
87.9766
95.8011
68.6010
14144193312617553435
78.6618
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
91.7223
87.9766
95.8011
68.6010
14144193312617553435
78.6618
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.4605
86.1404
99.7814
63.1476
141522277141523121
67.7419
ciseli-customSNP*map_l125_m0_e0*
77.7410
73.0049
83.1343
80.5630
141525233141322867775
27.0317
astatham-gatkSNPtimap_l125_m2_e0het
85.6054
75.0000
99.7041
80.6061
141574719141534219
45.2381
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5965
95.7727
99.4912
45.8166
14160625140787263
87.5000
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
93.4760
95.9242
91.1498
55.7793
14168602141511374617
44.9054
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50het
66.9508
90.0254
53.2915
48.7249
141881572142721250912414
99.2405
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
anovak-vgSNP*map_l125_m2_e0homalt
89.6412
81.6863
99.3125
67.9435
141933182140139781
83.5052
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.5878
96.0095
97.1732
53.9900
1419559014197413388
93.9467
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9690
91.1857
96.9275
72.3266
14204137312524397332
83.6272
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0372
96.1312
97.9605
45.4439
1421357215466322303
94.0994
jmaeng-gatkSNPtimap_l150_m2_e0*
81.1449
69.3009
97.8719
88.3988
1421562971421130934
11.0032
ckim-gatkSNPtimap_l150_m2_e0*
81.1968
69.3155
97.9938
88.2579
1421862941421429135
12.0275
asubramanian-gatkSNPtimap_l100_m1_e0het
64.3552
47.4851
99.8174
85.5215
1421815724142142610
38.4615
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.3655
97.3387
99.4143
58.7428
14228389142578451
60.7143
anovak-vgSNPtvmap_l100_m1_e0het
79.8335
92.3396
70.3109
72.6600
1423611811422660071268
21.1087
qzeng-customSNPtimap_l150_m2_e1*
80.4222
68.7352
96.8977
87.0560
14244647914149453387
85.4305
gduggal-bwavardSNPtiHG002compoundhet*
84.8363
81.4967
88.4613
41.1291
1424432341429818651554
83.3244
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
91.8499
88.8266
95.0863
43.5099
14254179314165732583
79.6448
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.6230
97.5440
95.7192
65.8529
1425835915451691402
58.1766
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.8288
96.4491
97.2114
54.8569
1426052514258409404
98.7775
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0502
96.4694
97.6380
53.4915
1426352214261345337
97.6812
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.9862
97.5782
92.5283
63.5798
142633541413011411110
97.2831
jlack-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.9102
92.5212
99.5569
59.5559
142641153143816458
90.6250
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
96.6577
96.6080
96.7075
54.0122
1426950114216484156
32.2314
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
90.7947
97.9343
84.6254
85.1417
14270301143222602202
7.7633
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
90.7947
97.9343
84.6254
85.1417
14270301143222602202
7.7633
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.7408
91.6287
98.0717
68.7918
142731304540621063839
78.9276
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.9208
96.5506
97.2938
53.6376
1427551014273397386
97.2292