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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
80651-80700 / 86044 show all
asubramanian-gatkSNP*HG002compoundhethet
97.7049
96.5369
98.9015
46.6042
136874911368515223
15.1316
ndellapenna-hhgaSNP*HG002compoundhethet
98.0271
96.5510
99.5491
42.9549
13689489136876236
58.0645
mlin-fermikitSNPtifunc_cds*
99.5022
99.3109
99.6942
17.8687
1369295136924234
80.9524
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
61.1245
61.5551
60.6998
48.1943
136968554199661292711157
86.3077
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
90.2475
83.3770
98.3520
63.7948
1369827311372623021
9.1304
gduggal-snapplatSNPtifunc_cds*
99.5243
99.4052
99.6437
28.8978
137058213705495
10.2041
ciseli-customSNPtifunc_cds*
98.7839
99.4488
98.1278
24.0438
13711761368026131
11.8774
ckim-gatkSNPtvmap_l100_m2_e0het
91.4895
86.9494
96.5299
84.2447
1371820591371449316
3.2454
jpowers-varprowlSNPtifunc_cds*
99.5285
99.5285
99.5285
26.5751
137226513722659
13.8462
asubramanian-gatkSNPtifunc_cds*
99.6805
99.5721
99.7892
27.6472
137285913726291
3.4483
jmaeng-gatkSNPtvmap_l100_m2_e0het
91.4492
87.0444
96.3236
84.5266
1373320441372952414
2.6718
ghariani-varprowlINDELI6_15**
61.1674
55.3640
68.3299
52.2203
13743110801376363796287
98.5578
ckim-vqsrSNPtifunc_cds*
99.7642
99.7244
99.8040
29.1716
137493813747270
0.0000
gduggal-bwavardINDELI6_15**
60.2022
55.3881
65.9327
50.0878
13749110741368570716805
96.2382
astatham-gatkSNPtifunc_cds*
99.8730
99.7897
99.9564
22.5679
13758291375660
0.0000
gduggal-snapfbSNP*HG002compoundhethet
75.1230
97.0518
61.2774
50.8228
13760418140278864298
3.3619
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.0686
94.1575
43.0321
53.7351
13763854138401832218101
98.7938
ciseli-customSNP*map_l150_m2_e1het
73.3676
67.5883
80.2276
84.7439
137636600137473388114
3.3648
ghariani-varprowlSNPtifunc_cds*
99.6201
99.8549
99.3864
28.0976
137672013767859
10.5882
qzeng-customSNPtifunc_cds*
99.7894
99.8622
99.7168
26.7032
137681913732394
10.2564
ltrigg-rtg2SNPtifunc_cds*
99.7392
99.8622
99.6165
20.8703
137681913767531
1.8868
qzeng-customSNPtimap_l125_m2_e0het
83.1453
72.9498
96.6538
86.6306
13770510613720475387
81.4737
anovak-vgSNP*map_l125_m1_e0homalt
89.5021
81.4552
99.3132
65.1171
137703135135939478
82.9787
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.5476
77.2827
68.3592
65.9014
1377140481466167863680
54.2293
ckim-gatkSNPtifunc_cds*
99.6887
99.8912
99.4870
29.0714
137721513770711
1.4085
jmaeng-gatkSNPtifunc_cds*
99.5302
99.8912
99.1718
29.3312
1377215137701151
0.8696
ltrigg-rtg1SNPtifunc_cds*
99.7465
99.8912
99.6022
21.3270
137721513771551
1.8182
egarrison-hhgaSNPtimap_l100_m0_e0het
99.1363
98.4982
99.7827
69.5619
13773210137743014
46.6667
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
rpoplin-dv42SNPtifunc_cds*
99.9420
99.9492
99.9347
23.0636
1378071377892
22.2222
gduggal-bwafbSNPtifunc_cds*
99.6673
99.9492
99.3869
27.6810
13780713780852
2.3529
jli-customSNPtifunc_cds*
99.9166
99.9492
99.8840
21.7559
13780713780160
0.0000
raldana-dualsentieonSNPtifunc_cds*
99.8985
99.9565
99.8406
21.8782
13781613779220
0.0000
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
dgrover-gatkSNPtifunc_cds*
99.9347
99.9565
99.9130
23.1014
13781613779120
0.0000
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
gduggal-snapfbSNPtifunc_cds*
99.7900
99.9637
99.6169
26.0872
13782513782532
3.7736
ckim-dragenSNPtifunc_cds*
99.6097
99.9637
99.2582
28.1352
137825137821031
0.9709
eyeh-varpipeSNPtifunc_cds*
99.2850
99.9637
98.6154
24.7463
137825136751921
0.5208
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
hfeng-pmm1SNPtifunc_cds*
99.9384
99.9637
99.9130
21.7209
13782513780120
0.0000
hfeng-pmm2SNPtifunc_cds*
99.9166
99.9710
99.8623
22.6414
13783413781190
0.0000
jli-customSNPtimap_l100_m0_e0het
98.9518
98.5697
99.3369
65.4782
13783200137839228
30.4348
gduggal-bwafbSNPtimap_l100_m0_e0het
98.5173
98.5983
98.4365
72.6281
137871961378821963
28.7671
ghariani-varprowlSNPtimap_l100_m0_e0het
97.4217
98.6269
96.2456
76.6277
1379119213792538130
24.1636
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
91.8743
94.4038
89.4769
44.0923
137998183995546993029
64.4605
raldana-dualsentieonSNPtimap_l100_m0_e0het
98.6534
98.7699
98.5371
69.8191
13811172138082052
0.9756