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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
80501-80550 / 86044 show all
jmaeng-gatkSNPtimap_l100_m1_e0homalt
84.6124
73.3575
99.9469
64.1277
1317547851317577
100.0000
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
65.0019
66.3696
63.6895
52.5107
13181667919510111237883
70.8712
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.1914
73.9716
85.2037
51.7929
1318146382431842231294
30.6417
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.1017
89.1985
95.2002
47.3849
13188159714241718698
97.2145
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
68.5075
66.4183
70.7325
47.6018
1319266701543163854862
76.1472
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.9721
95.9293
94.0338
60.7675
131975602164013731000
72.8332
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.9721
95.9293
94.0338
60.7675
131975602164013731000
72.8332
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7892
94.1206
99.6136
34.1069
13207825134065251
98.0769
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.4244
95.8506
97.0051
52.0671
1321357213215408385
94.3627
ghariani-varprowlSNP*HG002compoundhethet
84.6682
93.2007
77.5669
61.4559
1321496413447388929
0.7457
ckim-vqsrSNP*map_l150_m2_e1het
78.2150
64.9020
98.3989
91.7124
132167147132132152
0.9302
qzeng-customSNPtimap_l125_m1_e0het
82.7364
72.3585
96.5897
86.1572
13217504913170465385
82.7957
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0274
90.4837
76.7064
50.3167
1322613911293539283882
98.8289
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9091
95.9594
97.8778
43.6515
1322855714482314297
94.5860
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.8950
94.3201
99.6144
34.3188
13235797134335250
96.1538
gduggal-bwafbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.6109
85.8533
95.9267
79.8715
1323621814239180178
98.8889
mlin-fermikitSNP*map_l125_m2_e0het
61.8597
45.1531
98.1895
65.2404
1323816080132332448
3.2787
ckim-vqsrSNPtimap_l125_m2_e1het
81.5245
69.3666
98.8501
88.6777
132405847132381543
1.9481
ckim-isaacSNPtimap_l100_m0_e0*
75.5708
60.8148
99.7815
66.9687
13240853113241296
20.6897
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.2598
90.9752
82.0090
83.7372
132561315130872871130
4.5280
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.2598
90.9752
82.0090
83.7372
132561315130872871130
4.5280
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6346
96.2423
97.0302
52.9948
1326751813265406403
99.2611
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8830
96.2858
97.4877
51.4550
1327351213271342335
97.9532
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
97.0172
94.5909
99.5711
30.5429
13273759134665856
96.5517
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.3318
82.5652
72.7223
71.1326
1327428031203745151002
22.1927
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3318
82.5652
72.7223
71.1326
1327428031203745151002
22.1927
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7464
96.5472
98.9758
64.1922
1328247513239137125
91.2409
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7464
96.5472
98.9758
64.1922
1328247513239137125
91.2409
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7404
96.3511
97.1328
51.7215
1328250313280392385
98.2143
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0379
96.6562
99.4597
63.5583
13297460132547247
65.2778
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0379
96.6562
99.4597
63.5583
13297460132547247
65.2778
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.1075
96.6926
99.5645
63.4833
13302455132605844
75.8621
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.1075
96.6926
99.5645
63.4833
13302455132605844
75.8621
qzeng-customINDELI1_5HG002complexvarhomalt
99.1245
98.9887
99.2607
46.5706
13312136132929961
61.6162
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.1021
96.7944
99.4457
64.3875
13316441132757459
79.7297
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.1021
96.7944
99.4457
64.3875
13316441132757459
79.7297
ndellapenna-hhgaINDELI1_5HG002complexvarhomalt
99.1510
99.0259
99.2764
48.8027
13317131133089757
58.7629
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.6898
82.8388
93.1443
61.7926
13318275913301979950
97.0378
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.0981
96.8525
99.3761
51.0664
1332443322937144122
84.7222
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.0981
96.8525
99.3761
51.0664
1332443322937144122
84.7222
ltrigg-rtg1INDELI1_5HG002complexvarhomalt
99.5102
99.1299
99.8933
45.8849
1333011713110149
64.2857
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1679
96.6993
97.6410
51.8960
1333045513328322315
97.8261
egarrison-hhgaINDELI1_5HG002complexvarhomalt
99.1848
99.1225
99.2472
49.0370
133301181331510164
63.3663
ltrigg-rtg2INDELI1_5HG002complexvarhomalt
99.5439
99.1894
99.9010
45.4107
1333810913119138
61.5385
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1837
96.7573
97.6138
51.8740
1333844713336326319
97.8528
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.2252
97.0052
57.5294
65.0968
133454121337598749432
95.5236
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.2252
97.0052
57.5294
65.0968
133454121337598749432
95.5236
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
88.4879
79.8982
99.1469
44.6823
13347335832542824
85.7143