PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80351-80400 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | ti | map_l125_m0_e0 | * | 95.3999 | 98.4093 | 92.5691 | 82.2522 | 12559 | 203 | 12557 | 1008 | 96 | 9.5238 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | het | 90.0889 | 96.5271 | 84.4559 | 85.0397 | 12563 | 452 | 12464 | 2294 | 173 | 7.5414 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | * | 98.6735 | 98.5034 | 98.8442 | 76.2289 | 12571 | 191 | 12571 | 147 | 47 | 31.9728 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | homalt | 75.4463 | 68.6657 | 83.7129 | 51.9470 | 12572 | 5737 | 12572 | 2446 | 2353 | 96.1979 | |
| jli-custom | SNP | ti | map_l125_m0_e0 | * | 98.9692 | 98.5504 | 99.3915 | 69.4510 | 12577 | 185 | 12577 | 77 | 30 | 38.9610 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e1 | het | 98.2274 | 96.6500 | 99.8571 | 62.1754 | 12579 | 436 | 12581 | 18 | 1 | 5.5556 | |
| qzeng-custom | SNP | tv | map_l125_m2_e1 | * | 85.1190 | 75.5598 | 97.4472 | 83.5794 | 12586 | 4071 | 12559 | 329 | 276 | 83.8906 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | het | 95.8577 | 96.7115 | 95.0189 | 76.5004 | 12587 | 428 | 12590 | 660 | 337 | 51.0606 | |
| ndellapenna-hhga | SNP | ti | map_l150_m2_e0 | het | 98.7101 | 97.7253 | 99.7148 | 75.0553 | 12588 | 293 | 12588 | 36 | 17 | 47.2222 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 58.6790 | 56.6022 | 60.9139 | 57.4205 | 12594 | 9656 | 12597 | 8083 | 5610 | 69.4049 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | * | 98.9475 | 98.7149 | 99.1811 | 72.7585 | 12598 | 164 | 12596 | 104 | 70 | 67.3077 | |
| egarrison-hhga | SNP | ti | map_l125_m0_e0 | * | 99.2437 | 98.7149 | 99.7782 | 73.5653 | 12598 | 164 | 12598 | 28 | 14 | 50.0000 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | * | 47.5012 | 42.0784 | 54.5285 | 56.5286 | 12605 | 17351 | 24630 | 20539 | 16069 | 78.2365 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | * | 98.1359 | 98.7776 | 97.5025 | 75.7277 | 12606 | 156 | 12610 | 323 | 39 | 12.0743 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | het | 96.0905 | 96.8652 | 95.3281 | 81.7323 | 12607 | 408 | 12610 | 618 | 163 | 26.3754 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | het | 97.2776 | 99.5499 | 95.1068 | 80.0626 | 12607 | 57 | 12245 | 630 | 17 | 2.6984 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | * | 98.7816 | 98.7933 | 98.7699 | 72.8522 | 12608 | 154 | 12606 | 157 | 6 | 3.8217 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4697 | 91.8338 | 99.4055 | 29.1133 | 12640 | 1124 | 12707 | 76 | 75 | 98.6842 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | * | 99.0401 | 99.0440 | 99.0361 | 76.9678 | 12640 | 122 | 12638 | 123 | 30 | 24.3902 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | * | 99.2424 | 99.0519 | 99.4336 | 73.9101 | 12641 | 121 | 12639 | 72 | 20 | 27.7778 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | het | 98.4983 | 97.2647 | 99.7636 | 66.7853 | 12659 | 356 | 12661 | 30 | 5 | 16.6667 | |
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | * | 98.9758 | 99.2086 | 98.7441 | 75.3623 | 12661 | 101 | 12659 | 161 | 31 | 19.2547 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8428 | 92.0372 | 99.9767 | 29.6938 | 12668 | 1096 | 12856 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | * | 99.3611 | 99.3183 | 99.4039 | 74.1190 | 12675 | 87 | 12673 | 76 | 11 | 14.4737 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | * | 99.1282 | 99.3496 | 98.9077 | 76.2142 | 12679 | 83 | 12677 | 140 | 17 | 12.1429 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | het | 98.3596 | 98.4551 | 98.2644 | 79.4915 | 12682 | 199 | 12682 | 224 | 63 | 28.1250 | |
| jli-custom | SNP | ti | map_l150_m2_e0 | het | 98.9128 | 98.5327 | 99.2958 | 74.7496 | 12692 | 189 | 12690 | 90 | 30 | 33.3333 | |
| qzeng-custom | SNP | * | map_l125_m2_e1 | homalt | 83.7240 | 72.4219 | 99.2062 | 67.7495 | 12697 | 4835 | 12498 | 100 | 99 | 99.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | het | 99.1606 | 98.5948 | 99.7330 | 76.2545 | 12700 | 181 | 12700 | 34 | 13 | 38.2353 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.0193 | 92.3530 | 97.8441 | 60.3645 | 12705 | 1052 | 12662 | 279 | 130 | 46.5950 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.0193 | 92.3530 | 97.8441 | 60.3645 | 12705 | 1052 | 12662 | 279 | 130 | 46.5950 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | * | 99.0106 | 99.6082 | 98.4201 | 77.7397 | 12712 | 50 | 12521 | 201 | 11 | 5.4726 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | het | 97.2721 | 98.6880 | 95.8962 | 82.5739 | 12712 | 169 | 12712 | 544 | 123 | 22.6103 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | het | 98.4890 | 98.6958 | 98.2832 | 77.8632 | 12713 | 168 | 12709 | 222 | 3 | 1.3514 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8671 | 92.3787 | 99.6294 | 28.3565 | 12715 | 1049 | 12903 | 48 | 48 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m2_e1 | het | 98.7157 | 97.7411 | 99.7100 | 75.1509 | 12721 | 294 | 12721 | 37 | 17 | 45.9459 | |
| hfeng-pmm1 | SNP | ti | map_l150_m2_e0 | het | 99.1156 | 98.7579 | 99.4759 | 76.0299 | 12721 | 160 | 12717 | 67 | 17 | 25.3731 | |
| ckim-dragen | SNP | ti | map_l150_m2_e0 | het | 97.5203 | 98.7579 | 96.3134 | 81.5763 | 12721 | 160 | 12723 | 487 | 52 | 10.6776 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | het | 93.6574 | 97.7641 | 89.8818 | 85.8419 | 12724 | 291 | 12623 | 1421 | 85 | 5.9817 | |
| rpoplin-dv42 | SNP | ti | map_l150_m2_e0 | het | 99.0005 | 98.8200 | 99.1816 | 75.9652 | 12729 | 152 | 12725 | 105 | 68 | 64.7619 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | homalt | 75.6197 | 68.8710 | 83.8347 | 52.0014 | 12737 | 5757 | 12737 | 2456 | 2363 | 96.2134 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | het | 94.5791 | 98.9054 | 90.6154 | 86.2755 | 12740 | 141 | 12736 | 1319 | 117 | 8.8704 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.6166 | 92.7056 | 98.7164 | 31.4832 | 12760 | 1004 | 13612 | 177 | 161 | 90.9605 | |
| dgrover-gatk | SNP | ti | map_l150_m2_e0 | het | 99.0461 | 99.1693 | 98.9232 | 81.0415 | 12774 | 107 | 12770 | 139 | 30 | 21.5827 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | het | 99.0233 | 99.1926 | 98.8546 | 79.5912 | 12777 | 104 | 12773 | 148 | 13 | 8.7838 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.3770 | 92.9127 | 87.9760 | 55.1468 | 12782 | 975 | 12731 | 1740 | 1664 | 95.6322 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.3770 | 92.9127 | 87.9760 | 55.1468 | 12782 | 975 | 12731 | 1740 | 1664 | 95.6322 | |
| hfeng-pmm3 | SNP | ti | map_l150_m2_e0 | het | 99.3316 | 99.2392 | 99.4243 | 76.7413 | 12783 | 98 | 12779 | 74 | 8 | 10.8108 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | het | 98.8935 | 99.2392 | 98.5502 | 79.6724 | 12783 | 98 | 12779 | 188 | 30 | 15.9574 | |