PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80201-80250 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | segdup | het | 98.6041 | 99.5428 | 97.6830 | 94.4043 | 11975 | 55 | 11973 | 284 | 5 | 1.7606 | |
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.9341 | 95.6793 | 44.7012 | 53.4443 | 11980 | 541 | 12051 | 14908 | 14726 | 98.7792 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| hfeng-pmm1 | SNP | ti | segdup | het | 99.6179 | 99.7007 | 99.5352 | 89.0346 | 11994 | 36 | 11992 | 56 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | segdup | het | 99.7339 | 99.7007 | 99.7671 | 89.8249 | 11994 | 36 | 11992 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | ti | segdup | het | 99.5229 | 99.7257 | 99.3210 | 90.4269 | 11997 | 33 | 11995 | 82 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | segdup | het | 99.5602 | 99.7506 | 99.3705 | 89.3230 | 12000 | 30 | 11998 | 76 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | * | 84.7104 | 74.9376 | 97.4144 | 82.6672 | 12002 | 4014 | 11981 | 318 | 271 | 85.2201 | |
| raldana-dualsentieon | SNP | ti | segdup | het | 99.4118 | 99.7672 | 99.0589 | 90.1934 | 12002 | 28 | 12000 | 114 | 1 | 0.8772 | |
| ckim-dragen | SNP | ti | segdup | het | 97.7495 | 99.7922 | 95.7888 | 93.1126 | 12005 | 25 | 12010 | 528 | 5 | 0.9470 | |
| cchapple-custom | SNP | ti | segdup | het | 99.4449 | 99.8088 | 99.0837 | 92.7182 | 12007 | 23 | 12003 | 111 | 5 | 4.5045 | |
| jlack-gatk | SNP | ti | segdup | het | 97.5937 | 99.8088 | 95.4748 | 94.2828 | 12007 | 23 | 12005 | 569 | 5 | 0.8787 | |
| dgrover-gatk | SNP | ti | segdup | het | 99.5358 | 99.8337 | 99.2397 | 90.9955 | 12010 | 20 | 12008 | 92 | 3 | 3.2609 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| jli-custom | SNP | ti | segdup | het | 99.4165 | 99.8504 | 98.9864 | 89.3080 | 12012 | 18 | 12012 | 123 | 2 | 1.6260 | |
| bgallagher-sentieon | SNP | ti | segdup | het | 99.2686 | 99.8587 | 98.6854 | 90.5804 | 12013 | 17 | 12011 | 160 | 2 | 1.2500 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | het | 98.4476 | 97.1463 | 99.7841 | 64.1912 | 12017 | 353 | 12019 | 26 | 5 | 19.2308 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 65.4735 | 66.2226 | 64.7412 | 60.6352 | 12030 | 6136 | 13472 | 7337 | 6068 | 82.7041 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 65.4735 | 66.2226 | 64.7412 | 60.6352 | 12030 | 6136 | 13472 | 7337 | 6068 | 82.7041 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.6613 | 87.3341 | 85.9988 | 44.9670 | 12039 | 1746 | 13212 | 2151 | 1124 | 52.2548 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.9344 | 96.1664 | 99.7686 | 57.4637 | 12041 | 480 | 12074 | 28 | 18 | 64.2857 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0791 | 96.2623 | 97.9098 | 62.3765 | 12053 | 468 | 11898 | 254 | 243 | 95.6693 | |
| ckim-isaac | SNP | * | map_l150_m2_e1 | het | 74.2817 | 59.2251 | 99.6036 | 80.2344 | 12060 | 8303 | 12061 | 48 | 9 | 18.7500 | |
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | het | 95.4272 | 95.2464 | 95.6088 | 82.3444 | 12062 | 602 | 12062 | 554 | 169 | 30.5054 | |
| gduggal-snapplat | SNP | ti | map_l150_m2_e1 | het | 93.1452 | 92.6854 | 93.6096 | 87.2522 | 12063 | 952 | 12085 | 825 | 463 | 56.1212 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6110 | 96.3981 | 98.8550 | 60.6748 | 12070 | 451 | 11914 | 138 | 125 | 90.5797 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_l150_m1_e0 | het | 98.6644 | 97.6395 | 99.7111 | 73.7513 | 12078 | 292 | 12078 | 35 | 17 | 48.5714 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6041 | 96.4619 | 98.7737 | 60.3970 | 12078 | 443 | 11921 | 148 | 125 | 84.4595 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6406 | 96.4859 | 98.8233 | 61.6023 | 12081 | 440 | 11926 | 142 | 130 | 91.5493 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | het | 93.4529 | 97.7284 | 89.5358 | 84.8427 | 12089 | 281 | 11996 | 1402 | 82 | 5.8488 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 87.8316 | 82.7461 | 93.5831 | 40.4184 | 12095 | 2522 | 17909 | 1228 | 1155 | 94.0554 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.0688 | 96.6376 | 77.5838 | 51.2369 | 12100 | 421 | 13152 | 3800 | 3663 | 96.3947 | |
| astatham-gatk | SNP | tv | map_l100_m2_e0 | het | 86.7029 | 76.7066 | 99.6951 | 76.6657 | 12102 | 3675 | 12098 | 37 | 10 | 27.0270 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 91.0608 | 87.8273 | 94.5415 | 37.6092 | 12107 | 1678 | 12020 | 694 | 633 | 91.2104 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.9013 | 96.7415 | 99.0893 | 45.1717 | 12113 | 408 | 33076 | 304 | 254 | 83.5526 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | homalt | 83.2331 | 71.6711 | 99.2430 | 64.3421 | 12116 | 4789 | 11930 | 91 | 90 | 98.9011 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | * | 95.4780 | 94.9616 | 96.0000 | 76.0355 | 12119 | 643 | 12120 | 505 | 265 | 52.4752 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 60.3422 | 54.4854 | 67.6098 | 69.0550 | 12123 | 10127 | 15818 | 7578 | 3735 | 49.2874 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e1 | het | 74.4402 | 59.5688 | 99.2072 | 92.2354 | 12130 | 8233 | 12138 | 97 | 27 | 27.8351 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.6713 | 88.1806 | 87.1679 | 60.5788 | 12131 | 1626 | 17750 | 2613 | 591 | 22.6177 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.6713 | 88.1806 | 87.1679 | 60.5788 | 12131 | 1626 | 17750 | 2613 | 591 | 22.6177 | |
| gduggal-bwavard | SNP | * | HG002compoundhet | het | 83.4515 | 85.5762 | 81.4296 | 49.6147 | 12133 | 2045 | 13203 | 3011 | 2546 | 84.5566 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.4567 | 75.6715 | 88.1998 | 59.8076 | 12143 | 3904 | 12273 | 1642 | 1435 | 87.3934 | |
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | * | 90.9915 | 95.2045 | 87.1355 | 81.6073 | 12150 | 612 | 12043 | 1778 | 144 | 8.0990 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.6262 | 97.1009 | 76.5768 | 51.4227 | 12158 | 363 | 12930 | 3955 | 3851 | 97.3704 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 68.7607 | 88.3768 | 56.2708 | 60.0546 | 12158 | 1599 | 12195 | 9477 | 9356 | 98.7232 | |