PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
80051-80100 / 86044 show all
ckim-isaacSNPtimap_l150_m2_e0*
72.1859
56.5571
99.7506
77.5984
11601891111601295
17.2414
ckim-dragenINDELD1_5HG002compoundhet*
95.8880
94.8263
96.9738
65.9095
1160263311600362359
99.1713
cchapple-customINDELD1_5HG002compoundhet*
96.3466
94.8427
97.8989
66.1292
1160463112627271261
96.3100
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
98.2242
97.7347
98.7186
47.5188
1160626911787153107
69.9346
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
44.0360
38.0774
52.2053
83.4017
116061887414180129822052
15.8065
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
44.0360
38.0774
52.2053
83.4017
116061887414180129822052
15.8065
ckim-dragenSNP*map_l150_m2_e0homalt
99.4944
99.2307
99.7595
68.4345
1160990116142825
89.2857
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.0947
69.5121
97.3091
55.1710
11612509311608321314
97.8193
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.0947
69.5121
97.3091
55.1710
11612509311608321314
97.8193
ghariani-varprowlSNP*map_l150_m2_e1homalt
98.9183
98.1990
99.6482
74.5368
11614213116144125
60.9756
ckim-vqsrSNPtvmap_l100_m2_e0het
84.3040
73.6198
98.6157
86.5798
116154162116121631
0.6135
ltrigg-rtg1SNP*map_l150_m0_e0*
98.1003
96.5675
99.6825
69.8517
11619413116153715
40.5405
jpowers-varprowlSNP*map_l150_m2_e1homalt
98.9483
98.2413
99.6655
76.3898
11619208116193926
66.6667
ltrigg-rtg1INDELI1_5HG002compoundhet*
96.6675
94.0758
99.4060
64.7187
11624732115476952
75.3623
hfeng-pmm3INDELI1_5HG002compoundhet*
96.3303
94.1081
98.6599
63.2057
1162872811632158151
95.5696
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
77.1235
65.2618
94.2549
80.4969
11629619011632709196
27.6446
jlack-gatkSNP*map_l150_m2_e1homalt
99.0927
98.3512
99.8455
71.6669
11632195116321813
72.2222
hfeng-pmm1INDELI1_5HG002compoundhet*
96.2606
94.1648
98.4519
64.4321
1163572111638183176
96.1749
jli-customINDELI1_5HG002compoundhet*
96.2734
94.1810
98.4609
66.0757
1163771911643182172
94.5055
gduggal-snapvardINDELI1_5HG002complexvarhomalt
92.5606
86.5333
99.4905
33.4524
116371811109355651
91.0714
ndellapenna-hhgaSNP*map_l150_m2_e0homalt
99.6916
99.4786
99.9056
72.3853
1163861116381110
90.9091
jli-customSNP*map_l150_m2_e0homalt
99.7002
99.4871
99.9142
70.0015
1163960116391010
100.0000
bgallagher-sentieonSNP*map_l150_m2_e0homalt
99.6746
99.4871
99.8627
70.7014
1163960116391612
75.0000
raldana-dualsentieonSNP*map_l150_m2_e0homalt
99.7131
99.5213
99.9056
69.8863
116435611643118
72.7273
mlin-fermikitSNPtisegduphet
97.7090
96.7914
98.6442
84.9489
11644386116411600
0.0000
ltrigg-rtg2SNP*map_l150_m2_e0homalt
99.7345
99.5384
99.9314
70.4233
11645541164787
87.5000
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
83.1973
74.7833
93.7446
68.3849
1164939286175841214009
97.2822
ltrigg-rtg1SNP*map_l150_m2_e0homalt
99.7604
99.6324
99.8886
72.6706
1165643116581313
100.0000
hfeng-pmm2INDELI1_5HG002compoundhet*
96.1838
94.3347
98.1069
65.2150
1165670011660225222
98.6667
egarrison-hhgaSNP*map_l150_m2_e0homalt
99.7775
99.6410
99.9143
73.3265
1165742116571010
100.0000
gduggal-bwaplatSNPtimap_l100_m2_e1homalt
77.3423
63.0691
99.9657
71.0565
1166468301165344
100.0000
hfeng-pmm3SNP*map_l150_m2_e0homalt
99.7521
99.7350
99.7691
73.4090
1166831116682710
37.0370
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.3731
72.7114
89.8397
50.0523
1166843791244114071388
98.6496
hfeng-pmm1SNP*map_l150_m2_e0homalt
99.7606
99.7521
99.7692
73.4870
1167029116702710
37.0370
asubramanian-gatkSNPtisegduphet
98.1746
97.0158
99.3614
92.7228
1167135911669754
5.3333
ckim-isaacSNPtisegduphet
98.4687
97.0158
99.9657
87.9143
116713591167140
0.0000
hfeng-pmm2SNP*map_l150_m2_e0homalt
99.7735
99.7863
99.7607
73.5081
1167425116742811
39.2857
eyeh-varpipeSNP*map_l150_m2_e0homalt
99.8398
99.7949
99.8849
75.5076
116752411277138
61.5385
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.8009
78.9787
84.8322
50.9671
1167731081167820882070
99.1379
ndellapenna-hhgaINDELI1_5HG002compoundhet*
95.9469
94.5452
97.3908
62.1995
1168267411683313258
82.4281
cchapple-customINDELI1_5HG002compoundhet*
96.1801
94.5694
97.8466
66.9542
1168567113268292281
96.2329
anovak-vgSNPtimap_l150_m2_e1het
76.0299
89.7810
65.9316
81.6800
1168513301160059941333
22.2389
astatham-gatkSNP*map_l150_m2_e1homalt
99.3541
98.8501
99.8633
70.8527
11691136116911613
81.2500
astatham-gatkINDELD1_5HG002compoundhet*
96.5582
95.6110
97.5244
66.3015
1169853711700297294
98.9899
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
89.5071
83.4165
96.5571
49.6329
1170523273113111109
98.1982
gduggal-bwafbSNP*map_l150_m2_e1homalt
99.4055
98.9685
99.8465
74.9037
11705122117051811
61.1111
gduggal-bwavardSNP*map_l150_m0_e0*
92.1711
97.2989
87.5568
86.0626
1170732511568164470
4.2579
rpoplin-dv42SNP*map_l150_m2_e1homalt
99.3508
98.9854
99.7189
73.6505
11707120117073332
96.9697
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
90.4880
83.4521
98.8195
30.8039
11710232212138145128
88.2759
ckim-gatkSNPtvmap_l125_m1_e0*
83.4275
73.1269
97.1059
85.2195
1171243041171034914
4.0115