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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1592 1593 1594 1595 1596 1597 1598 1599 1600 ... 1720 1721 » 79751-79800 / 86044 show all
gduggal-bwaplat	SNP	*	map_l150_m1_e0	het	73.2588	58.0710	99.2046	91.8292	11217	8099	11225	90	26	28.8889
raldana-dualsentieon	SNP	*	map_l150_m1_e0	homalt	99.7067	99.5121	99.9020	67.3803	11218	55	11218	11	8	72.7273
ltrigg-rtg2	SNP	*	map_l150_m1_e0	homalt	99.7245	99.5210	99.9288	67.8086	11219	54	11221	8	7	87.5000
rpoplin-dv42	SNP	tv	map_l150_m2_e0	*	98.9506	98.8287	99.0728	74.8529	11222	133	11220	105	61	58.0952
egarrison-hhga	SNP	tv	map_l150_m2_e0	*	99.2922	98.8287	99.7600	74.2574	11222	133	11222	27	12	44.4444
jli-custom	SNP	tv	map_l150_m2_e0	*	99.0817	98.8287	99.3360	73.0560	11222	133	11221	75	23	30.6667
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	77.1368	72.0532	82.9923	72.5173	11223	4353	45225	9268	7975	86.0488
ltrigg-rtg2	SNP	tv	map_l150_m2_e1	*	98.6899	97.5830	99.8222	64.8925	11224	278	11226	20	2	10.0000
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
ckim-dragen	SNP	tv	map_l150_m2_e0	*	98.2503	98.9080	97.6013	79.0121	11231	124	11230	276	27	9.7826
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5570	99.4777	99.6364	55.6678	11237	59	11234	41	40	97.5610
gduggal-snapfb	SNP	*	map_l150_m2_e1	homalt	97.2353	95.0114	99.5658	80.8094	11237	590	11237	49	20	40.8163
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	94.8171	94.6358	94.9992	46.8433	11238	637	11246	592	535	90.3716
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7471	99.5042	99.9911	53.7923	11240	56	11209	1	1	100.0000
hfeng-pmm3	SNP	*	map_l150_m1_e0	homalt	99.7427	99.7250	99.7604	71.2100	11242	31	11242	27	10	37.0370
hfeng-pmm1	SNP	*	map_l150_m1_e0	homalt	99.7516	99.7427	99.7604	71.3075	11244	29	11244	27	10	37.0370
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2214	99.5485	98.8965	52.5869	11245	51	19268	215	45	20.9302
hfeng-pmm2	SNP	*	map_l150_m1_e0	homalt	99.7650	99.7782	99.7517	71.3283	11248	25	11248	28	11	39.2857
eyeh-varpipe	SNP	*	map_l150_m1_e0	homalt	99.8338	99.7871	99.8804	73.5129	11249	24	10861	13	8	61.5385
gduggal-bwaplat	SNP	ti	map_l150_m2_e1	*	70.2141	54.2827	99.3818	90.4903	11249	9474	11253	70	25	35.7143
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	81.3693	71.3832	94.6037	70.0040	11250	4510	11255	642	179	27.8816
raldana-dualsentieon	SNP	tv	map_l150_m2_e0	*	99.0273	99.0841	98.9706	75.8842	11251	104	11249	117	3	2.5641
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7960	99.6105	99.9822	54.2557	11252	44	11220	2	2	100.0000
astatham-gatk	SNP	ti	map_l125_m2_e0	homalt	99.4872	99.0755	99.9023	65.7910	11253	105	11253	11	10	90.9091
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	97.7673	98.4344	97.1092	52.3550	11254	179	11287	336	18	5.3571
hfeng-pmm1	SNP	tv	map_l150_m2_e0	*	99.3292	99.1193	99.5400	75.2398	11255	100	11253	52	14	26.9231
dgrover-gatk	SNP	tv	map_l150_m2_e0	*	99.0452	99.1281	98.9624	78.7121	11256	99	11254	118	24	20.3390
gduggal-bwafb	SNP	ti	map_l125_m2_e0	homalt	99.5006	99.1196	99.8847	69.9640	11258	100	11258	13	7	53.8462
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6018	99.6636	99.5400	55.7604	11258	38	11253	52	41	78.8462
raldana-dualsentieon	INDEL	I1_5	HG002compoundhet	*	94.0016	91.1217	97.0695	64.7141	11259	1097	11262	340	339	99.7059
jlack-gatk	INDEL	I1_5	HG002compoundhet	*	93.1060	91.1379	95.1609	67.4017	11261	1095	11268	573	557	97.2077
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6460	99.6990	99.5931	55.9882	11262	34	11258	46	37	80.4348
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7217	99.6990	99.7443	56.4874	11262	34	11313	29	10	34.4828
raldana-dualsentieon	INDEL	D1_5	HG002compoundhet	*	94.6881	92.0801	97.4481	64.3836	11266	969	11265	295	292	98.9831
gduggal-bwavard	SNP	tv	map_l150_m2_e1	*	94.1240	97.9830	90.5575	83.2923	11270	232	11240	1172	51	4.3515
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8050	99.7787	99.8314	54.7146	11271	25	11248	19	17	89.4737
jlack-gatk	INDEL	D1_5	HG002compoundhet	*	93.7462	92.1291	95.4211	64.7145	11272	963	11274	541	497	91.8669
ckim-dragen	SNP	ti	map_l125_m2_e0	homalt	99.5541	99.2604	99.8495	63.2256	11274	84	11279	17	16	94.1176
hfeng-pmm2	SNP	tv	map_l150_m2_e0	*	99.1297	99.3219	98.9383	77.9235	11278	77	11276	121	14	11.5702
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8407	99.9468	55.7785	11278	18	11278	6	6	100.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1734	98.6530	99.6994	37.5173	11279	154	11276	34	0	0.0000
hfeng-pmm3	SNP	tv	map_l150_m2_e0	*	99.3876	99.3395	99.4357	75.5855	11280	75	11278	64	9	14.0625
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8584	99.9291	56.1359	11280	16	11280	8	7	87.5000
ltrigg-rtg1	SNP	tv	map_l150_m2_e1	*	98.9128	98.0786	99.7613	68.2500	11281	221	11283	27	6	22.2222
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8805	99.8672	99.8937	56.0776	11281	15	11280	12	12	100.0000
rpoplin-dv42	SNP	ti	map_l125_m2_e0	homalt	99.5456	99.3309	99.7613	68.8663	11282	76	11282	27	26	96.2963
bgallagher-sentieon	SNP	tv	map_l150_m2_e0	*	98.9822	99.3659	98.6015	77.4624	11283	72	11281	160	25	15.6250
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.9739	98.2672	99.6909	53.0163	11285	199	11289	35	33	94.2857
dgrover-gatk	SNP	ti	map_l125_m2_e0	homalt	99.6336	99.3573	99.9115	66.1532	11285	73	11285	10	8	80.0000

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