PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79551-79600 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0203 | 98.2985 | 99.7527 | 60.4577 | 10919 | 189 | 10893 | 27 | 9 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0338 | 98.2985 | 99.7802 | 60.1845 | 10919 | 189 | 10893 | 24 | 6 | 25.0000 | |
| ghariani-varprowl | SNP | tv | map_l100_m0_e0 | * | 97.0755 | 98.5204 | 95.6724 | 76.1776 | 10920 | 164 | 10921 | 494 | 87 | 17.6113 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 78.2170 | 70.8374 | 87.3129 | 79.9686 | 10921 | 4496 | 3792 | 551 | 400 | 72.5953 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 80.7791 | 74.7144 | 87.9154 | 43.6787 | 10921 | 3696 | 21956 | 3018 | 1053 | 34.8907 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 88.1620 | 79.3519 | 99.1726 | 31.2754 | 10922 | 2842 | 2517 | 21 | 18 | 85.7143 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5442 | 98.3435 | 98.7456 | 63.1402 | 10924 | 184 | 11336 | 144 | 15 | 10.4167 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.8238 | 95.1411 | 88.7300 | 60.2423 | 10926 | 558 | 10920 | 1387 | 1378 | 99.3511 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.9839 | 95.1498 | 92.8462 | 56.1753 | 10927 | 557 | 10928 | 842 | 429 | 50.9501 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 71.0827 | 79.4287 | 64.3238 | 52.6876 | 10927 | 2830 | 14341 | 7954 | 5860 | 73.6736 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.0827 | 79.4287 | 64.3238 | 52.6876 | 10927 | 2830 | 14341 | 7954 | 5860 | 73.6736 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3053 | 98.6647 | 99.9543 | 56.5280 | 10936 | 148 | 10933 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9656 | 98.4786 | 99.4574 | 53.6403 | 10939 | 169 | 15763 | 86 | 67 | 77.9070 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | * | 98.4300 | 98.7008 | 98.1606 | 72.2063 | 10940 | 144 | 10940 | 205 | 38 | 18.5366 | |
| astatham-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.4818 | 99.0675 | 99.8996 | 63.1497 | 10942 | 103 | 10942 | 11 | 10 | 90.9091 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.9868 | 95.2804 | 94.6949 | 56.1929 | 10942 | 542 | 10942 | 613 | 287 | 46.8189 | |
| ckim-gatk | SNP | ti | map_l100_m0_e0 | het | 86.7938 | 78.2593 | 97.4176 | 85.5089 | 10943 | 3040 | 10940 | 290 | 35 | 12.0690 | |
| jlack-gatk | SNP | tv | map_l100_m0_e0 | * | 94.2911 | 98.7279 | 90.2359 | 79.7630 | 10943 | 141 | 10942 | 1184 | 68 | 5.7432 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7792 | 98.5236 | 99.0362 | 55.6925 | 10944 | 164 | 10892 | 106 | 23 | 21.6981 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | homalt | 77.2870 | 62.9928 | 99.9726 | 75.5188 | 10945 | 6430 | 10945 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | homalt | 99.4956 | 99.1127 | 99.8814 | 67.6839 | 10947 | 98 | 10947 | 13 | 7 | 53.8462 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | * | 98.7643 | 98.7911 | 98.7375 | 67.3276 | 10950 | 134 | 10949 | 140 | 63 | 45.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0138 | 96.9458 | 97.0818 | 54.6044 | 10951 | 345 | 10945 | 329 | 249 | 75.6839 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | * | 99.0774 | 98.8271 | 99.3290 | 64.5356 | 10954 | 130 | 10954 | 74 | 25 | 33.7838 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | * | 99.2887 | 98.8632 | 99.7179 | 67.1372 | 10958 | 126 | 10958 | 31 | 14 | 45.1613 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2043 | 97.0166 | 97.3928 | 54.4393 | 10959 | 337 | 10945 | 293 | 257 | 87.7133 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | * | 42.2745 | 36.5854 | 50.0587 | 72.5688 | 10961 | 18999 | 11522 | 11495 | 5404 | 47.0117 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | * | 98.2217 | 98.8903 | 97.5621 | 72.7546 | 10961 | 123 | 10965 | 274 | 31 | 11.3139 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3297 | 98.9174 | 99.7455 | 57.3296 | 10964 | 120 | 10972 | 28 | 3 | 10.7143 | |
| mlin-fermikit | INDEL | D6_15 | * | het | 90.4589 | 94.5825 | 86.6799 | 51.7766 | 10964 | 628 | 10952 | 1683 | 1653 | 98.2175 | |
| ckim-dragen | SNP | ti | map_l125_m1_e0 | homalt | 99.5597 | 99.2757 | 99.8453 | 60.3228 | 10965 | 80 | 10970 | 17 | 16 | 94.1176 | |
| rpoplin-dv42 | SNP | ti | map_l125_m1_e0 | homalt | 99.5372 | 99.3119 | 99.7635 | 66.3061 | 10969 | 76 | 10969 | 26 | 25 | 96.1538 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | * | 91.6223 | 96.6094 | 87.1248 | 82.6892 | 10970 | 385 | 10942 | 1617 | 102 | 6.3080 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | * | 96.7549 | 96.6270 | 96.8830 | 81.7123 | 10972 | 383 | 10972 | 353 | 92 | 26.0623 | |
| anovak-vg | SNP | * | HG002compoundhet | het | 78.0560 | 77.3875 | 78.7362 | 46.6128 | 10972 | 3206 | 12323 | 3328 | 2553 | 76.7127 | |
| dgrover-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.6414 | 99.3753 | 99.9090 | 63.5537 | 10976 | 69 | 10976 | 10 | 8 | 80.0000 | |
| gduggal-snapfb | SNP | tv | map_l150_m2_e0 | * | 96.3189 | 96.6711 | 95.9692 | 79.3481 | 10977 | 378 | 10976 | 461 | 180 | 39.0456 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | homalt | 98.3080 | 96.6808 | 99.9909 | 63.9160 | 10981 | 377 | 10979 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | * | 99.1204 | 99.1249 | 99.1158 | 68.4908 | 10987 | 97 | 10986 | 98 | 4 | 4.0816 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3222 | 99.1249 | 99.5202 | 58.6425 | 10987 | 97 | 10994 | 53 | 8 | 15.0943 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3263 | 98.9377 | 99.7181 | 59.8869 | 10990 | 118 | 10964 | 31 | 12 | 38.7097 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8169 | 98.9467 | 98.6874 | 61.3838 | 10991 | 117 | 10977 | 146 | 120 | 82.1918 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | homalt | 99.7369 | 99.5292 | 99.9454 | 62.9489 | 10993 | 52 | 10993 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | homalt | 97.8156 | 95.9417 | 99.7641 | 75.2443 | 10993 | 465 | 10994 | 26 | 14 | 53.8462 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | * | 99.0852 | 99.1880 | 98.9825 | 72.6937 | 10994 | 90 | 10993 | 113 | 23 | 20.3540 | |
| ndellapenna-hhga | SNP | ti | map_l125_m1_e0 | homalt | 99.7415 | 99.5473 | 99.9364 | 64.8588 | 10995 | 50 | 10995 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | homalt | 97.8366 | 95.9679 | 99.7796 | 68.5265 | 10996 | 462 | 10863 | 24 | 19 | 79.1667 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7370 | 99.5745 | 99.9001 | 63.0037 | 10998 | 47 | 10998 | 11 | 9 | 81.8182 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | homalt | 99.7551 | 99.5835 | 99.9273 | 62.3216 | 10999 | 46 | 10999 | 8 | 8 | 100.0000 | |