PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
79501-79550 / 86044 show all
ltrigg-rtg2INDELI1_5*hetalt
98.3546
97.0076
99.7395
72.4903
10860335111052929
100.0000
ltrigg-rtg1SNPtvmap_l100_m0_e0*
98.8489
98.0061
99.7063
58.4119
1086322110862326
18.7500
anovak-vgSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
97.5583
98.0061
97.1145
57.2508
1086322111039328130
39.6341
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1969
98.0419
98.3525
52.6692
1086521710865182178
97.8022
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
95.1518
97.8124
92.6322
56.2191
1086524311001875754
86.1714
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.2300
99.5784
96.9176
63.0014
10865461087934649
14.1618
asubramanian-gatkSNP*map_l100_m2_e1homalt
56.2073
39.0920
99.9816
79.6586
10866169301086620
0.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7292
99.5876
99.8713
60.0265
1086645108661410
71.4286
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.2421
98.0870
98.3978
52.9535
1087021210870177173
97.7401
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.2467
99.6334
98.8630
62.3274
10871401086912524
19.2000
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8118
99.6334
99.9908
59.9447
10871401086810
0.0000
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7843
99.6517
99.9173
61.4911
10873381086995
55.5556
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8072
99.6609
99.9540
61.5860
10874371087052
40.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7844
99.6701
99.8990
60.1508
108753610875119
81.8182
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6701
99.9632
59.9499
10875361087243
75.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.6838
99.6701
99.6976
61.7359
1087536108783321
63.6364
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
90.2830
86.8621
93.9845
38.9075
1087616451660810631029
96.8015
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8348
99.6884
99.9816
59.7111
10877341087421
50.0000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8394
99.6976
99.9816
59.7625
10878331087521
50.0000
cchapple-customSNP*map_l150_m1_e0homalt
98.2123
96.4961
99.9908
66.3750
108783951087411
100.0000
eyeh-varpipeSNPtvmap_l150_m1_e0*
97.4561
99.7067
95.3048
77.8264
10880321081953314
2.6266
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7434
99.9174
59.7828
10883281088195
55.5556
ltrigg-rtg1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8395
99.7434
99.9357
57.3637
10883281088774
57.1429
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50het
97.1980
95.1981
99.2838
34.4662
10884549109517911
13.9241
ltrigg-rtg2SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8349
99.7617
99.9082
57.3447
108852610888106
60.0000
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.9176
98.2314
99.6135
43.6336
10886196108264239
92.8571
jlack-gatkSNPtimap_l125_m1_e0homalt
99.2298
98.5695
99.8991
63.8084
1088715810887119
81.8182
anovak-vgSNP*func_cdshet
98.2393
97.5540
98.9342
34.7247
108882731086111770
59.8291
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.5569
70.6298
99.3305
60.9945
108894528109797474
100.0000
ghariani-varprowlSNPtimap_l125_m1_e0homalt
99.2029
98.5967
99.8167
66.5358
10890155108902015
75.0000
jpowers-varprowlSNPtimap_l125_m1_e0homalt
99.2166
98.6148
99.8259
68.6168
10892153108921915
78.9474
gduggal-snapfbSNPtimap_l125_m2_e0homalt
97.7959
95.9060
99.7619
75.2353
10893465108942614
53.8462
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7641
99.8350
99.6932
57.1024
1089318107243314
42.4242
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.7118
98.0915
99.3400
56.1553
10896212108377212
16.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.6957
98.3216
99.0726
47.6211
108961861089610298
96.0784
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8854
99.8625
99.9082
58.4392
108961510886106
60.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9221
99.8717
99.9725
60.1200
10897141089332
66.6667
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8488
99.8809
99.8167
61.3691
108981310894205
25.0000
gduggal-snapvardSNPtimap_l125_m2_e0homalt
97.8264
95.9500
99.7776
68.4862
10898460107662419
79.1667
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.8701
98.1095
99.6426
59.5927
10898210108733920
51.2821
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.8900
99.9450
60.3037
10899121089565
83.3333
gduggal-bwavardSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.7554
98.3399
99.1744
57.4612
10900184108119055
61.1111
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9129
99.8992
99.9266
60.1913
10900111089685
62.5000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_11to50het
98.9153
98.1365
99.7066
60.6969
10901207108753210
31.2500
ndellapenna-hhgaSNPtvmap_l100_m0_e0*
98.9920
98.3490
99.6435
65.9868
10901183109013917
43.5897
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.9267
99.9084
60.9850
10903810906102
20.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.4953
98.4031
98.5877
57.4464
109071771082015536
23.2258
jmaeng-gatkSNPtimap_l100_m0_e0het
86.6066
78.0162
97.3229
85.9062
1090930741090630035
11.6667
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.4075
95.0192
91.8496
49.4485
109125721385012291043
84.8657
ckim-gatkSNP*map_l125_m2_e0homalt
77.1330
62.8029
99.9359
76.3243
1091264631091274
57.1429