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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
79351-79400 / 86044 show all
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.1042
99.4409
98.7698
49.5614
10672601067813313
9.7744
cchapple-customSNPtimap_l125_m1_e0homalt
98.2873
96.6410
99.9906
60.9405
106743711067211
100.0000
jmaeng-gatkSNP*HG002compoundhethomalt
99.4551
99.0262
99.8877
35.0471
10677105106761211
91.6667
ckim-gatkSNP*HG002compoundhethomalt
99.4644
99.0354
99.8971
35.0629
10678104106771110
90.9091
eyeh-varpipeINDELD6_15*het
91.9882
92.1325
91.8444
46.7075
1068091210079895860
96.0894
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7826
98.8983
96.6918
85.1220
106821191075636869
18.7500
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.2583
99.5434
98.9748
37.3981
1068349107161115
4.5045
cchapple-customSNP*HG002compoundhethomalt
99.5150
99.0818
99.9520
31.0764
10683991041955
100.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50*
97.4056
99.5621
95.3406
49.3281
10685471049751352
10.1365
ciseli-customSNP*segduphomalt
98.3606
99.4694
97.2762
88.7149
106865710607297168
56.5657
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.4422
96.4266
98.4794
49.9423
1068639610686165162
98.1818
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.7997
63.9808
99.2322
42.2569
106886017108568482
97.6190
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.7997
63.9808
99.2322
42.2569
106886017108568482
97.6190
gduggal-snapfbSNP*HG002compoundhethomalt
96.1466
99.1282
93.3392
44.8696
106889410692763275
36.0419
gduggal-snapfbSNP*map_l150_m1_e0homalt
97.1242
94.8195
99.5437
79.7473
10689584106894920
40.8163
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.3788
99.6180
99.1407
38.1189
106914110730931
1.0753
gduggal-bwavardSNPtvmap_l150_m1_e0*
93.9183
97.9839
90.1767
82.0762
1069222010667116250
4.3029
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.1305
99.0001
99.2612
79.9407
10693108107488026
32.5000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.6152
64.0108
98.5632
45.9265
10693601210153148131
88.5135
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.6152
64.0108
98.5632
45.9265
10693601210153148131
88.5135
ltrigg-rtg1SNPtvmap_l150_m1_e0*
98.8720
98.0022
99.7574
65.7671
1069421810693266
23.0769
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.3007
99.0279
99.5750
78.5377
10696105107774621
45.6522
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.6965
98.0478
99.3539
59.8156
10698213106106947
68.1159
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5812
99.7018
99.4609
42.3318
107003210700582
3.4483
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.5618
72.3842
85.8922
52.6470
1070240831082517781586
89.2013
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
98.2106
96.5536
99.9255
53.9316
107023821073783
37.5000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.7849
99.1019
98.4699
79.4919
1070497107471672
1.1976
asubramanian-gatkSNP*map_l100_m2_e0homalt
55.9994
38.8911
99.9813
79.7534
10704168191070420
0.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
70.9466
66.7041
75.7654
53.5142
1070453431086434753422
98.4748
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4564
99.7391
99.1754
42.0292
107042810704892
2.2472
gduggal-snapvardSNPtvmap_l100_m0_e0*
91.8069
96.6258
87.4458
78.2460
1071037410685153485
5.5411
gduggal-bwafbSNP*segduphomalt
99.7625
99.6928
99.8322
89.4414
1071033107101818
100.0000
gduggal-snapfbSNP*segduphomalt
99.6002
99.7114
99.4891
90.4625
1071231107115517
30.9091
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.0614
99.8136
98.3203
43.6922
1071220107121835
2.7322
anovak-vgSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
97.6411
98.1762
97.1119
60.4037
1071219911029328130
39.6341
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
91.0653
90.2147
91.9320
48.7934
10713116210768945395
41.7989
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.5877
98.1945
98.9841
59.2905
107141971062010934
31.1927
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.6239
99.8416
99.4072
41.3357
107151710732647
10.9375
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.7675
99.8416
99.6935
39.2563
107151710732334
12.1212
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
96.5046
98.2128
94.8548
61.3261
107161951071158192
15.8348
gduggal-snapfbSNPtvmap_l100_m0_e0*
96.3071
96.6979
95.9195
73.9602
1071836610719456169
37.0614
ndellapenna-hhgaSNP*HG002compoundhethomalt
98.7381
99.4064
98.0787
35.7852
107186410720210197
93.8095
ndellapenna-hhgaSNPtvmap_l150_m1_e0*
98.9384
98.2221
99.6652
71.6791
10718194107183617
47.2222
egarrison-hhgaSNP*HG002compoundhethomalt
99.2639
99.4064
99.1218
35.3785
1071864107229582
86.3158
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9752
96.7154
99.2683
46.8913
10718364107187974
93.6709
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9618
96.7154
99.2407
47.8941
10718364107188278
95.1220
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.8882
99.8789
99.8975
38.7986
107191310717115
45.4545
jpowers-varprowlSNPtvmap_l100_m0_e0*
96.7509
96.7160
96.7858
76.5215
107203641072035689
25.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.5866
99.8975
99.2777
41.4403
107211110721781
1.2821
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4573
99.8975
99.0210
40.1856
1072111107211061
0.9434