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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
79251-79300 / 86044 show all
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
67.7028
91.6754
53.6688
45.2639
10528956145701257812360
98.2668
ltrigg-rtg1INDELI1_5*hetalt
96.8345
94.0598
99.7778
71.7595
10530665107762424
100.0000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
gduggal-snapfbSNPtvmap_l150_m1_e0*
96.2193
96.5634
95.8777
77.9802
1053737510536453179
39.5143
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
jpowers-varprowlSNPtvmap_l150_m1_e0*
96.7188
96.5726
96.8655
80.4419
105383741053834191
26.6862
gduggal-snapvardSNPtvmap_l150_m1_e0*
91.4337
96.5909
86.7993
81.5080
10540372105141599100
6.2539
ltrigg-rtg1SNP*HG002compoundhethomalt
98.8047
97.7741
99.8572
33.1849
1054224010491158
53.3333
cchapple-customINDELD1_5HG002complexvarhomalt
99.5858
99.5565
99.6150
53.3069
1055147100923936
92.3077
cchapple-customINDELI1_5HG002compoundhethetalt
0.0000
94.4082
0.0000
0.0000
10552625000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4426
95.0383
99.9718
29.9341
105545511063332
66.6667
hfeng-pmm3INDELI1_5HG002compoundhethetalt
97.1381
94.4439
99.9906
55.8738
105566211061411
100.0000
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.1813
97.7317
92.7606
85.9802
1055624510635830248
29.8795
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1911
97.7409
98.6454
80.0759
105572441055914573
50.3448
asubramanian-gatkINDELD1_5HG002complexvarhomalt
99.7403
99.6226
99.8582
60.0860
1055840105651513
86.6667
rpoplin-dv42INDELD1_5HG002complexvarhomalt
99.7026
99.6414
99.7639
58.4249
1056038105652523
92.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.7327
97.7687
79.5653
85.1430
10560241106532736243
8.8816
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
64.2360
57.8454
72.2140
63.0306
1056276971364752513074
58.5412
hfeng-pmm1INDELI1_5HG002compoundhethetalt
97.1665
94.4976
99.9906
57.5817
105626151061811
100.0000
astatham-gatkINDELI1_5HG002compoundhethetalt
97.1718
94.5245
99.9718
56.8751
105656121062633
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
cchapple-customINDELI1_5*hetalt
0.0000
94.3993
0.0000
0.0000
10568627000
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.2062
93.5907
90.8621
57.8426
10572724105501061847
79.8303
hfeng-pmm3INDELI1_5*hetalt
97.1290
94.4350
99.9812
61.2138
105726231063222
100.0000
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1902
91.5599
99.1202
67.5348
10577975104789344
47.3118
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1902
91.5599
99.1202
67.5348
10577975104789344
47.3118
hfeng-pmm1INDELD1_5HG002complexvarhomalt
99.8679
99.8207
99.9150
58.2795
10579191058398
88.8889
hfeng-pmm1INDELI1_5*hetalt
97.1621
94.4975
99.9812
62.7564
105796161063722
100.0000
cchapple-customSNPtvmap_l150_m1_e0*
96.2415
96.9483
95.5449
77.7956
105793331057349381
16.4300
ckim-dragenINDELD1_5HG002complexvarhomalt
99.7544
99.8207
99.6881
60.4958
1057919105493330
90.9091
jlack-gatkINDELD1_5HG002complexvarhomalt
99.8161
99.8396
99.7926
59.1577
1058117105882221
95.4545
hfeng-pmm2INDELD1_5HG002complexvarhomalt
99.8773
99.8396
99.9150
58.5881
10581171058597
77.7778
gduggal-snapfbSNPtimap_l125_m1_e0homalt
97.7417
95.8081
99.7549
73.6978
10582463105832614
53.8462
astatham-gatkINDELI1_5*hetalt
97.1674
94.5243
99.9624
62.1019
105826131064544
100.0000
ckim-vqsrINDELD1_5HG002complexvarhomalt
99.8538
99.8585
99.8491
60.1802
1058315105901614
87.5000
jmaeng-gatkINDELD1_5HG002complexvarhomalt
99.8538
99.8679
99.8397
60.1891
1058414105911715
88.2353
hfeng-pmm3INDELD1_5HG002complexvarhomalt
99.8962
99.8773
99.9151
58.2388
10585131059098
88.8889
ckim-gatkINDELD1_5HG002complexvarhomalt
99.8633
99.8773
99.8492
60.1757
1058513105921614
87.5000
hfeng-pmm2INDELI1_5HG002compoundhethetalt
97.2799
94.7124
99.9906
57.4359
105865911064311
100.0000
astatham-gatkINDELD1_5HG002complexvarhomalt
99.8868
99.8962
99.8774
60.2109
1058711105921311
84.6154
bgallagher-sentieonINDELD1_5HG002complexvarhomalt
99.8445
99.9151
99.7740
60.1815
105899105942422
91.6667
jli-customINDELD1_5HG002complexvarhomalt
99.9010
99.9151
99.8868
59.4114
105899105931210
83.3333
raldana-dualsentieonINDELD1_5HG002complexvarhomalt
99.8492
99.9151
99.7834
59.8813
105899105942321
91.3043
dgrover-gatkINDELI1_5HG002compoundhethetalt
97.2852
94.7392
99.9718
57.2014
105895881065033
100.0000
dgrover-gatkINDELD1_5HG002complexvarhomalt
99.8963
99.9245
99.8680
60.1555
105908105951412
85.7143
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4707
98.0557
98.8892
80.4368
105912101059411952
43.6975
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
62.0729
98.0650
45.4073
82.4158
105922091075712933236
1.8248
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6178
95.3805
99.9625
30.9240
105925131067143
75.0000