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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
79151-79200 / 86044 show all
hfeng-pmm1SNPtvmap_l125_m2_e0het
99.3085
99.0328
99.5858
71.6339
10341101103394311
25.5814
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0234
99.8552
98.2053
45.9033
103421510342189184
97.3545
jli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.4474
99.8648
99.0334
44.0841
10343141034810198
97.0297
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0282
99.8648
98.2055
45.9010
103431410343189184
97.3545
ndellapenna-hhgaSNPtvmap_l125_m2_e1het
98.8154
98.0195
99.6244
69.7483
10344209103443916
41.0256
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0283
99.8745
98.1963
46.0818
103441310344190184
96.8421
astatham-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0520
99.8745
98.2429
45.7715
103441310344185181
97.8378
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.6696
99.8938
97.4750
45.7112
103461110346268263
98.1343
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0806
99.8938
98.2806
45.8961
103461110346181177
97.7901
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.9858
99.8938
98.0942
44.9243
103461110346201197
98.0100
jlack-gatkSNPtvmap_l125_m2_e0het
92.9966
99.0806
87.6165
84.4986
103469610344146281
5.5404
raldana-dualsentieonSNPtvmap_l125_m2_e0het
98.8912
99.0902
98.6930
74.4522
1034795103451371
0.7299
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2848
99.4427
99.1274
50.6623
1034958103389183
91.2088
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2229
99.4523
98.9946
49.9952
10350571033910598
93.3333
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.4419
95.8245
95.0624
80.9574
1035045110358538336
62.4535
ckim-vqsrSNPtimap_l150_m2_e0*
66.8194
50.4631
98.8632
91.2397
1035110161103491193
2.5210
ckim-isaacSNP*segduphomalt
98.1370
96.3511
99.9903
85.3967
103513921035111
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2755
99.4715
99.0802
50.4204
1035255103419689
92.7083
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3381
99.4715
97.2303
50.5019
103525510356295278
94.2373
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.2803
99.4811
99.0803
50.1719
1035354103429688
91.6667
ghariani-varprowlSNPtvmap_l125_m2_e0het
96.7579
99.1764
94.4546
80.4692
10356861035660893
15.2961
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
99.3332
99.5580
99.1095
50.6288
1036146103509384
90.3226
hfeng-pmm2SNPtvmap_l125_m2_e0het
99.0157
99.2434
98.7891
75.7772
10363791036112711
8.6614
hfeng-pmm3SNPtvmap_l125_m2_e0het
99.3771
99.3201
99.4342
72.2814
103717110369595
8.4746
dgrover-gatkSNPtvmap_l125_m2_e0het
99.0688
99.3488
98.7904
77.6779
10374681037212722
17.3228
asubramanian-gatkSNP*segduphomalt
98.2111
96.5838
99.8941
88.4606
10376367103761110
90.9091
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.1762
50.3884
58.5798
35.8416
10378102181115378866105
77.4157
gduggal-bwavardSNPtvmap_l125_m2_e1het
93.2098
98.3701
88.5639
83.4663
1038117210354133765
4.8616
ckim-dragenINDELI1_5HG002compoundhethetalt
96.3036
92.8872
99.9808
55.1746
103827951043222
100.0000
bgallagher-sentieonSNPtvmap_l125_m2_e0het
98.8667
99.4350
98.3049
76.2296
10383591038117922
12.2905
ckim-isaacSNPtvmap_l100_m2_e0het
79.2946
65.8300
99.6834
69.5147
10386539110389338
24.2424
anovak-vgSNPtilowcmp_SimpleRepeat_quadTR_11to50*
96.2926
96.8040
95.7866
41.7994
1038934310503462244
52.8139
ckim-dragenINDELI1_5*hetalt
96.2953
92.8718
99.9809
60.6438
103977981045122
100.0000
asubramanian-gatkSNPtvmap_l100_m2_e1*
58.2603
41.1264
99.8655
87.2297
103981488510396142
14.2857
gduggal-bwaplatSNPtimap_l150_m1_e0*
68.9590
52.8054
99.3512
89.9469
104099303104136824
35.2941
bgallagher-sentieonINDELI1_5HG002compoundhethetalt
96.4336
93.1377
99.9714
55.3771
104107671047033
100.0000
egarrison-hhgaSNPtvmap_l125_m2_e1het
99.1904
98.6828
99.7032
70.4601
10414139104143112
38.7097
eyeh-varpipeSNPtvmap_l125_m2_e0het
96.7900
99.7414
94.0082
76.9260
10415271030865713
1.9787
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.5348
93.8046
99.4286
27.8282
10417688104416059
98.3333
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8228
93.8496
99.9905
28.4361
104226831050111
100.0000
asubramanian-gatkINDELI1_5HG002compoundhethetalt
96.2877
93.2540
99.5255
58.2114
10423754104875046
92.0000
gduggal-snapplatINDELI1_5HG002complexvarhomalt
83.8960
77.5134
91.4241
57.4270
10424302410586993140
14.0987
gduggal-bwafbSNPtvmap_l125_m2_e1het
98.2193
98.7871
97.6581
76.5519
104251281042525045
18.0000
bgallagher-sentieonINDELI1_5*hetalt
96.4303
93.1398
99.9619
60.7048
104277681048944
100.0000
jli-customSNPtvmap_l125_m2_e1het
99.0030
98.8060
99.2008
70.7055
10427126104268421
25.0000
ckim-dragenSNPtvmap_l125_m2_e1het
97.7464
98.8534
96.6639
79.1212
104321211043136026
7.2222
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7386
93.9847
99.6588
27.1170
10437668105163636
100.0000
asubramanian-gatkINDELI1_5*hetalt
96.2314
93.2470
99.4133
63.4018
10439756105056258
93.5484
gduggal-bwafbINDELD1_5HG002complexvarhomalt
98.4856
98.5186
98.4525
57.9745
1044115710434164151
92.0732
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1998
96.7133
99.7327
79.6799
1044635510447283
10.7143