PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79101-79150 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 79.2993 | 66.3164 | 98.6030 | 66.3016 | 10224 | 5193 | 9740 | 138 | 125 | 90.5797 | |
| jmaeng-gatk | INDEL | I1_5 | * | hetalt | 95.4538 | 91.3354 | 99.9611 | 60.3706 | 10225 | 970 | 10283 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.7284 | 98.2608 | 80.8820 | 41.3226 | 10226 | 181 | 10564 | 2497 | 2416 | 96.7561 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e0 | het | 96.3724 | 97.9506 | 94.8442 | 74.2096 | 10228 | 214 | 10228 | 556 | 207 | 37.2302 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8678 | 98.2992 | 99.4430 | 40.4688 | 10230 | 177 | 10177 | 57 | 24 | 42.1053 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 50.5742 | 45.9865 | 56.1787 | 51.4566 | 10232 | 12018 | 10138 | 7908 | 7671 | 97.0030 | |
| ndellapenna-hhga | SNP | tv | map_l125_m2_e0 | het | 98.8271 | 98.0368 | 99.6302 | 69.6751 | 10237 | 205 | 10237 | 38 | 16 | 42.1053 | |
| ckim-vqsr | INDEL | I1_5 | HG002compoundhet | hetalt | 95.5975 | 91.5988 | 99.9612 | 55.8418 | 10238 | 939 | 10299 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.3584 | 92.3931 | 96.4091 | 46.0732 | 10239 | 843 | 11115 | 414 | 403 | 97.3430 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6463 | 98.4049 | 98.8889 | 50.5045 | 10241 | 166 | 10235 | 115 | 88 | 76.5217 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | * | 58.0625 | 40.9300 | 99.8635 | 87.2733 | 10246 | 14787 | 10244 | 14 | 2 | 14.2857 | |
| ckim-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.6413 | 91.6793 | 99.9612 | 55.8202 | 10247 | 930 | 10308 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | homalt | 96.3093 | 96.7164 | 95.9056 | 58.3612 | 10250 | 348 | 10283 | 439 | 309 | 70.3872 | |
| ckim-vqsr | INDEL | I1_5 | * | hetalt | 95.5907 | 91.5945 | 99.9516 | 60.1444 | 10254 | 941 | 10316 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 74.2906 | 94.9819 | 61.0017 | 81.9477 | 10259 | 542 | 10341 | 6611 | 313 | 4.7345 | |
| ckim-gatk | INDEL | I1_5 | * | hetalt | 95.6301 | 91.6749 | 99.9419 | 60.1212 | 10263 | 932 | 10325 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | het | 98.4798 | 97.2993 | 99.6893 | 57.3735 | 10268 | 285 | 10267 | 32 | 2 | 6.2500 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 69.0093 | 82.0142 | 59.5643 | 43.2407 | 10269 | 2252 | 28735 | 19507 | 17809 | 91.2954 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | homalt | 92.9111 | 86.8268 | 99.9123 | 74.6875 | 10269 | 1558 | 10259 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002complexvar | homalt | 96.1786 | 96.9145 | 95.4537 | 57.9255 | 10271 | 327 | 10183 | 485 | 469 | 96.7010 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | het | 93.1678 | 98.3624 | 88.4944 | 83.4152 | 10271 | 171 | 10245 | 1332 | 64 | 4.8048 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4328 | 98.7316 | 98.1358 | 49.9641 | 10275 | 132 | 10265 | 195 | 165 | 84.6154 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | * | 92.0738 | 89.4279 | 94.8810 | 86.0143 | 10286 | 1216 | 10287 | 555 | 293 | 52.7928 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 59.0651 | 56.3393 | 62.0679 | 49.1269 | 10287 | 7972 | 10307 | 6299 | 4780 | 75.8851 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | het | 90.7385 | 97.4983 | 84.8553 | 82.7554 | 10289 | 264 | 10259 | 1831 | 116 | 6.3353 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | * | 89.5961 | 85.5219 | 94.0779 | 88.4577 | 10290 | 1742 | 10294 | 648 | 357 | 55.0926 | |
| asubramanian-gatk | SNP | * | map_l100_m1_e0 | homalt | 55.1894 | 38.1143 | 99.9806 | 78.4662 | 10292 | 16711 | 10292 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7920 | 99.4303 | 96.2068 | 45.3054 | 10298 | 59 | 10906 | 430 | 320 | 74.4186 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.0248 | 95.3430 | 92.7426 | 84.9164 | 10298 | 503 | 10121 | 792 | 175 | 22.0960 | |
| cchapple-custom | SNP | tv | map_l125_m2_e1 | het | 95.6281 | 97.6500 | 93.6882 | 79.3490 | 10305 | 248 | 10331 | 696 | 117 | 16.8103 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.5405 | 96.0212 | 99.1085 | 32.5488 | 10305 | 427 | 10339 | 93 | 45 | 48.3871 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | het | 99.1915 | 98.6880 | 99.7001 | 70.3958 | 10305 | 137 | 10305 | 31 | 12 | 38.7097 | |
| astatham-gatk | SNP | * | map_l125_m0_e0 | het | 89.5045 | 81.3803 | 99.4306 | 82.1625 | 10306 | 2358 | 10303 | 59 | 18 | 30.5085 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.0868 | 99.0968 | 99.0767 | 50.8276 | 10313 | 94 | 10302 | 96 | 89 | 92.7083 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | homalt | 94.7112 | 90.0244 | 99.9127 | 68.9685 | 10315 | 1143 | 10304 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8869 | 99.6041 | 98.1799 | 38.4191 | 10316 | 41 | 10303 | 191 | 187 | 97.9058 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | het | 98.9924 | 98.7933 | 99.1922 | 70.6143 | 10316 | 126 | 10315 | 84 | 21 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4122 | 99.6041 | 99.2209 | 44.4011 | 10316 | 41 | 10316 | 81 | 79 | 97.5309 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3560 | 99.6428 | 97.1020 | 45.5337 | 10320 | 37 | 10320 | 308 | 303 | 98.3766 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3548 | 99.1736 | 99.5367 | 47.6794 | 10321 | 86 | 10312 | 48 | 43 | 89.5833 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | het | 97.7368 | 98.8508 | 96.6476 | 79.0398 | 10322 | 120 | 10321 | 358 | 26 | 7.2626 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.6910 | 99.3935 | 43.8031 | 10325 | 32 | 10325 | 63 | 62 | 98.4127 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5421 | 99.7007 | 99.3840 | 44.2028 | 10326 | 31 | 10326 | 64 | 61 | 95.3125 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.8109 | 99.7103 | 95.9825 | 45.9159 | 10327 | 30 | 10321 | 432 | 429 | 99.3056 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 79.7416 | 66.9975 | 98.4728 | 66.8746 | 10329 | 5088 | 9672 | 150 | 125 | 83.3333 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | het | 98.9943 | 98.9849 | 99.0036 | 71.3714 | 10336 | 106 | 10334 | 104 | 55 | 52.8846 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4368 | 99.3178 | 99.5561 | 50.0867 | 10336 | 71 | 10317 | 46 | 37 | 80.4348 | |
| gduggal-snapfb | SNP | tv | map_l125_m2_e1 | het | 96.3919 | 97.9721 | 94.8619 | 74.2875 | 10339 | 214 | 10339 | 560 | 207 | 36.9643 | |