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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
78251-78300 / 86044 show all
ltrigg-rtg2SNPtifunc_cdshet
99.6069
99.8354
99.3795
21.1847
8490148489531
1.8868
ltrigg-rtg1SNPtifunc_cdshet
99.6011
99.8471
99.3563
21.6630
8491138490551
1.8182
qzeng-customSNPtifunc_cdshet
99.7296
99.8589
99.6007
30.7386
8492128481341
2.9412
ndellapenna-hhgaSNPtvsegdup*
99.4730
99.5546
99.3915
90.2986
84943884945218
34.6154
ghariani-varprowlSNPtifunc_cdshet
99.5080
99.8942
99.1249
31.7349
849598495752
2.6667
ltrigg-rtg1SNPtvsegdup*
98.9694
99.5663
98.3796
89.2053
849537850014020
14.2857
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
88.6540
89.8499
87.4895
45.7726
849896093431336702
52.5449
egarrison-hhgaSNPtvsegdup*
99.5315
99.6015
99.4616
90.4428
84983484984615
32.6087
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
79.1180
67.8700
94.8349
76.6136
849840238501463140
30.2376
ltrigg-rtg2SNPtvsegdup*
98.9872
99.6132
98.3690
88.4663
849933850414121
14.8936
raldana-dualsentieonSNPtifunc_cdshet
99.8414
99.9412
99.7418
23.3144
849958497220
0.0000
ckim-gatkSNPtifunc_cdshet
99.5548
99.9412
99.1713
33.6071
849958497711
1.4085
jmaeng-gatkSNPtifunc_cdshet
99.2988
99.9412
98.6647
33.9419
8499584971151
0.8696
jmaeng-gatkINDELD6_15HG002compoundhet*
95.0402
94.1203
95.9783
36.0728
85005318496356353
99.1573
jli-customSNPtifunc_cdshet
99.8825
99.9530
99.8121
22.8972
850048500160
0.0000
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
gduggal-bwafbSNPtifunc_cdshet
99.4792
99.9530
99.0099
30.9221
850048500852
2.3529
hfeng-pmm3SNPtifunc_cdshet
99.9001
99.9530
99.8473
22.7326
850048498130
0.0000
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
ndellapenna-hhgaSNPtifunc_cdshet
99.9118
99.9530
99.8708
22.7256
850048500110
0.0000
gduggal-snapfbSNPtifunc_cdshet
99.6775
99.9530
99.4036
28.0582
850048500511
1.9608
hfeng-pmm2SNPtifunc_cdshet
99.8707
99.9647
99.7769
23.7626
850138499190
0.0000
bgallagher-sentieonSNPtifunc_cdshet
99.8707
99.9647
99.7769
24.1158
850138499190
0.0000
eyeh-varpipeSNPtifunc_cdshet
98.8564
99.9647
97.7724
26.7528
8501384271921
0.5208
egarrison-hhgaSNPtifunc_cdshet
99.9236
99.9647
99.8825
23.1721
850138501100
0.0000
dgrover-gatkSNPtifunc_cdshet
99.9118
99.9647
99.8590
25.0066
850138499120
0.0000
ckim-dragenSNPtifunc_cdshet
99.3804
99.9647
98.8029
32.2466
8501385011031
0.9709
jlack-gatkSNPtifunc_cdshet
99.1254
99.9765
98.2886
33.6861
8502285001481
0.6757
rpoplin-dv42SNPtvsegdup*
99.6835
99.6835
99.6834
91.0590
85052785012712
44.4444
qzeng-customSNPtimap_l150_m1_e0het
79.9066
68.7551
95.3758
89.6012
850538658477411348
84.6715
raldana-dualsentieonSNPtvsegdup*
99.5671
99.7656
99.3693
91.0002
8512208508546
11.1111
hfeng-pmm1SNPtvsegdup*
99.7305
99.7773
99.6837
90.5181
8513198509276
22.2222
jli-customSNPtvsegdup*
99.5673
99.7773
99.3581
90.4270
8513198513556
10.9091
jlack-gatkSNPtvsegdup*
97.7319
99.7890
95.7578
94.5195
85141885103777
1.8568
hfeng-pmm3SNPtvsegdup*
99.7247
99.7890
99.6604
90.6553
8514188510295
17.2414
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
gduggal-snapplatSNPtiHG002compoundhethet
78.6871
89.5844
70.1534
57.2786
851599086453678282
7.6672
cchapple-customSNPtvsegdup*
99.5434
99.8008
99.2874
93.0362
8515178499619
14.7541
bgallagher-sentieonSNPtvsegdup*
99.4858
99.8125
99.1612
91.3387
8516168512726
8.3333
hfeng-pmm2SNPtvsegdup*
99.6780
99.8125
99.5439
91.3819
8516168512394
10.2564
dgrover-gatkSNPtvsegdup*
99.6606
99.8359
99.4859
91.6354
8518148514446
13.6364
ckim-dragenSNPtvsegdup*
98.3491
99.8476
96.8949
93.2025
85191385192736
2.1978
eyeh-varpipeSNPtvsegdup*
97.0429
99.8476
94.3914
91.6933
851913839849911
2.2044
ckim-vqsrSNPtvmap_l125_m1_e0*
69.0966
53.2030
98.5313
88.9389
8521749585201271
0.7874
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.8331
93.3976
58.3587
78.4954
85306038633616087
1.4123
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.8331
93.3976
58.3587
78.4954
85306038633616087
1.4123
mlin-fermikitINDELD1_5HG002compoundhet*
74.1830
69.7262
79.2484
64.3487
85313704852022312171
97.3106
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
62.7686
68.2214
58.1230
35.1882
8542397916951122139571
78.3673