PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
78151-78200 / 86044 show all
anovak-vgSNPtvsegdup*
97.7325
97.6676
97.7974
93.3295
8333199830318780
42.7807
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
82.0117
91.2515
74.4710
86.1394
833479982352823102
3.6132
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.0117
91.2515
74.4710
86.1394
833479982352823102
3.6132
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4096
99.6175
99.2025
47.1436
83343283346766
98.5075
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.9346
99.2616
98.6098
64.3360
8334628299117105
89.7436
egarrison-hhgaINDELD1_5HG002compoundhet*
69.0217
68.1406
69.9260
60.9500
83373898841036173521
97.3459
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4573
99.6653
99.2501
46.8795
83382883386360
95.2381
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0327
99.8086
98.2688
63.7648
8344168344147145
98.6395
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0327
99.8086
98.2688
63.7648
8344168344147145
98.6395
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9740
99.8086
98.1532
63.5791
8344168344157156
99.3631
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.4223
99.8206
99.0272
61.0885
83451583478280
97.5610
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.4223
99.8206
99.0272
61.0885
83451583478280
97.5610
gduggal-bwaplatSNPtvsegdup*
98.5186
97.8083
99.2394
94.9737
834518783506411
17.1875
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0563
99.8206
98.3037
63.5993
8345158345144142
98.6111
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0563
99.8206
98.3037
63.5993
8345158345144142
98.6111
mlin-fermikitSNPtimap_l150_m1_e0*
56.8574
42.3346
86.5470
60.8408
834511367834412971150
88.6662
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0447
99.8325
98.2692
63.7593
8346148346147145
98.6395
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.0447
99.8325
98.2692
63.7593
8346148346147145
98.6395
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7335
99.7729
97.7156
45.5716
8347198341195193
98.9744
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6936
99.8565
97.5576
63.3125
8348128348209208
99.5215
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.1997
99.7848
94.7452
59.6307
8348188348463461
99.5680
qzeng-customSNPtvmap_l100_m0_e0*
84.6327
75.3158
96.5801
84.0828
834827368331295249
84.4068
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9393
99.8565
98.0388
61.8965
8348128348167166
99.4012
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9393
99.8565
98.0388
61.8965
8348128348167166
99.4012
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1097
99.8684
98.3624
63.9223
8349118349139138
99.2806
hfeng-pmm3INDELD6_15HG002compoundhet*
95.1894
92.4704
98.0731
32.6928
83516808347164158
96.3415
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.3106
99.8446
98.7824
50.8940
8353138356103101
98.0583
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8173
99.8685
97.7879
55.5694
8355118355189186
98.4127
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7589
99.8685
97.6736
55.3106
8355118355199195
97.9899
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6774
99.8805
97.5029
53.2435
8356108356214211
98.5981
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8291
99.8805
97.7996
55.4001
8356108356188186
98.9362
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8233
99.8805
97.7882
55.5665
8356108356189186
98.4127
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8527
99.9044
97.8230
55.8586
835888358186184
98.9247
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.2716
99.9044
96.6913
55.0844
835888358286283
98.9510
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
74.2102
70.4505
78.3938
47.6036
83663509835623032257
98.0026
ciseli-customSNPtvsegdup*
95.0488
98.0661
92.2117
92.0351
8367165834770588
12.4823
ckim-vqsrSNPtvsegdup*
98.8248
98.0778
99.5833
94.7773
83681648364355
14.2857
ckim-vqsrSNPtimap_l150_m2_e0het
78.3377
64.9794
98.6095
91.3777
8370451183681182
1.6949
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
91.1545
88.4965
93.9771
38.2912
837010888301532447
84.0226
hfeng-pmm2INDELD6_15HG002compoundhet*
95.3103
92.7251
98.0438
33.3983
83746578370167162
97.0060
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
94.6208
90.1948
99.5035
32.1162
838091184174238
90.4762
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.6208
90.1948
99.5035
32.1162
838091184174238
90.4762
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
57.4173
46.1301
76.0173
74.8627
838097861036832712260
69.0920
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
57.4173
46.1301
76.0173
74.8627
838097861036832712260
69.0920
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
94.5232
90.1786
99.3077
80.7697
838391331562222
100.0000
qzeng-customSNPtvmap_l150_m2_e1*
83.1087
72.8830
96.6721
87.1352
838331198366288243
84.3750
gduggal-snapplatSNPtvmap_l100_m2_e0homalt
95.2754
91.0462
99.9166
66.1343
8389825839072
28.5714