PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78051-78100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | HG002compoundhet | * | 94.9235 | 92.7871 | 97.1606 | 36.4711 | 8143 | 633 | 8144 | 238 | 235 | 98.7395 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | het | 97.4340 | 98.5598 | 96.3335 | 79.4732 | 8144 | 119 | 8145 | 310 | 27 | 8.7097 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | * | 95.0754 | 92.8327 | 97.4292 | 36.3885 | 8147 | 629 | 8148 | 215 | 212 | 98.6047 | |
| qzeng-custom | SNP | ti | map_l125_m0_e0 | * | 76.6106 | 63.8536 | 95.7374 | 88.8132 | 8149 | 4613 | 8108 | 361 | 304 | 84.2105 | |
| qzeng-custom | SNP | ti | map_l125_m2_e0 | homalt | 83.3237 | 71.7644 | 99.3217 | 66.9963 | 8151 | 3207 | 8054 | 55 | 54 | 98.1818 | |
| jmaeng-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4372 | 80.5254 | 95.6471 | 87.5400 | 8154 | 1972 | 8152 | 371 | 12 | 3.2345 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | het | 98.8184 | 98.6930 | 98.9442 | 74.5223 | 8155 | 108 | 8153 | 87 | 54 | 62.0690 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | het | 93.6780 | 98.7414 | 89.1086 | 85.4382 | 8159 | 104 | 8157 | 997 | 87 | 8.7262 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | het | 99.0169 | 98.7414 | 99.2940 | 75.6362 | 8159 | 104 | 8157 | 58 | 15 | 25.8621 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | homalt | 89.1763 | 87.8306 | 90.5639 | 64.9644 | 8170 | 1132 | 8158 | 850 | 639 | 75.1765 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | * | 40.4494 | 25.3710 | 99.7071 | 94.4964 | 8172 | 24038 | 8169 | 24 | 6 | 25.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | * | 95.0368 | 93.1632 | 96.9873 | 36.8937 | 8176 | 600 | 8177 | 254 | 252 | 99.2126 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 81.2553 | 73.6695 | 90.5826 | 44.2627 | 8181 | 2924 | 2068 | 215 | 132 | 61.3953 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | homalt | 61.7649 | 44.6884 | 99.9633 | 77.1942 | 8182 | 10127 | 8182 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e0 | * | 62.7919 | 49.6210 | 85.4813 | 62.5997 | 8182 | 8307 | 8178 | 1389 | 1218 | 87.6890 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8942 | 97.8828 | 99.9267 | 51.0090 | 8183 | 177 | 8175 | 6 | 6 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | het | 98.8408 | 99.0802 | 98.6026 | 80.1354 | 8187 | 76 | 8185 | 116 | 25 | 21.5517 | |
| astatham-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.7145 | 93.3113 | 96.1606 | 37.2227 | 8189 | 587 | 8190 | 327 | 325 | 99.3884 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.3874 | 97.5345 | 74.3636 | 48.4035 | 8189 | 207 | 8676 | 2991 | 2903 | 97.0578 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | het | 99.1947 | 99.1407 | 99.2487 | 75.9543 | 8192 | 71 | 8190 | 62 | 6 | 9.6774 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | het | 98.8238 | 99.1529 | 98.4969 | 78.6095 | 8193 | 70 | 8191 | 125 | 11 | 8.8000 | |
| ckim-isaac | SNP | tv | segdup | * | 97.9382 | 96.0384 | 99.9147 | 88.7225 | 8194 | 338 | 8196 | 7 | 4 | 57.1429 | |
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | het | 98.6693 | 99.1771 | 98.1668 | 78.4213 | 8195 | 68 | 8193 | 153 | 25 | 16.3399 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.4453 | 97.6298 | 99.2746 | 55.5967 | 8197 | 199 | 8211 | 60 | 20 | 33.3333 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | HG002compoundhet | * | 95.3148 | 93.5278 | 97.1715 | 34.8185 | 8208 | 568 | 9894 | 288 | 283 | 98.2639 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2994 | 98.2297 | 92.5388 | 63.5670 | 8212 | 148 | 8223 | 663 | 640 | 96.5309 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2994 | 98.2297 | 92.5388 | 63.5670 | 8212 | 148 | 8223 | 663 | 640 | 96.5309 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8625 | 98.1712 | 99.5636 | 45.3709 | 8213 | 153 | 8213 | 36 | 34 | 94.4444 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.9104 | 93.5962 | 96.2620 | 37.4707 | 8214 | 562 | 8215 | 319 | 317 | 99.3730 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | * | 78.9086 | 74.1158 | 84.3641 | 75.9006 | 8215 | 2869 | 8212 | 1522 | 391 | 25.6899 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1287 | 97.8680 | 98.3908 | 64.4221 | 8217 | 179 | 8193 | 134 | 104 | 77.6119 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0520 | 90.0033 | 98.4822 | 69.9861 | 8220 | 913 | 8305 | 128 | 13 | 10.1562 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0520 | 90.0033 | 98.4822 | 69.9861 | 8220 | 913 | 8305 | 128 | 13 | 10.1562 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | homalt | 95.2001 | 90.9101 | 99.9149 | 63.7649 | 8221 | 822 | 8222 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | het | 98.5647 | 99.5038 | 97.6432 | 79.9389 | 8222 | 41 | 8079 | 195 | 8 | 4.1026 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5354 | 97.7762 | 99.3066 | 59.4807 | 8222 | 187 | 8306 | 58 | 19 | 32.7586 | |
| jpowers-varprowl | INDEL | I6_15 | * | het | 67.8850 | 81.9496 | 57.9408 | 49.0356 | 8222 | 1811 | 8267 | 6001 | 5983 | 99.7000 | |
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | * | 92.1390 | 91.0641 | 93.2396 | 35.4470 | 8224 | 807 | 8220 | 596 | 552 | 92.6174 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9414 | 98.3852 | 99.5039 | 60.3844 | 8225 | 135 | 8224 | 41 | 36 | 87.8049 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.6639 | 97.9752 | 73.0007 | 49.9045 | 8226 | 170 | 8617 | 3187 | 3103 | 97.3643 | |
| qzeng-custom | INDEL | I1_5 | * | hetalt | 84.6275 | 73.4792 | 99.7637 | 61.8865 | 8226 | 2969 | 3378 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1151 | 98.3983 | 99.8425 | 40.4315 | 8232 | 134 | 8242 | 13 | 12 | 92.3077 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7047 | 98.0586 | 97.3534 | 62.7778 | 8233 | 163 | 8203 | 223 | 199 | 89.2377 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | * | 76.7644 | 71.6136 | 82.7136 | 82.0895 | 8237 | 3265 | 8230 | 1720 | 402 | 23.3721 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |