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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
78001-78050 / 86044 show all
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.0211
84.5394
98.5791
36.6641
80491472804811698
84.4828
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.3579
96.3517
96.3641
60.0124
80553058057304143
47.0395
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.3579
96.3517
96.3641
60.0124
80553058057304143
47.0395
eyeh-varpipeINDELI6_15*het
83.0781
80.3150
86.0381
40.9246
80581975804813061290
98.7749
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6175
96.0100
99.2797
41.3870
806133516539120106
88.3333
gduggal-bwavardSNPtimap_l125_m0_e0het
92.1685
97.6038
87.3066
84.9758
80651988013116559
5.0644
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
81.1651
84.7285
77.8894
53.1421
80671454806722902086
91.0917
gduggal-snapvardINDELD1_5HG002compoundhet*
63.8171
65.9528
61.8155
58.2289
806841651236076355847
76.5815
gduggal-bwavardSNPtiHG002compoundhethet
83.9896
84.9027
83.0960
44.5406
80701435910418521542
83.2613
jli-customINDELI6_15HG002compoundhethetalt
97.1767
94.5414
99.9630
28.7734
8071466810933
100.0000
qzeng-customSNP*map_l150_m2_e1homalt
80.8266
68.2422
99.1019
73.2731
8071375679457272
100.0000
qzeng-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.5976
80.1449
79.0576
60.6684
807320001075528491405
49.3155
mlin-fermikitSNPtvHG002compoundhet*
91.2208
90.4965
91.9568
50.8884
80758488083707593
83.8755
jmaeng-gatkINDELI6_15HG002compoundhet*
93.8901
92.0123
95.8462
36.5464
80757018076350348
99.4286
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.3211
96.1768
98.4930
60.0607
80753218039123117
95.1220
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
57.7786
84.8230
43.8104
49.2561
807614458069103499583
92.5983
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7060
96.2006
99.2594
58.4607
807731980416042
70.0000
mlin-fermikitSNPtimap_l125_m1_e0het
61.0167
44.2242
98.3680
59.8543
80781018880771347
5.2239
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.6432
96.0756
99.2628
61.8299
807933080796052
86.6667
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.7838
96.2244
99.3945
58.5102
807931780444940
81.6327
gduggal-bwafbINDELI6_15*het
88.0827
80.5342
97.1926
38.4775
8080195313848400379
94.7500
jli-customINDELI6_15*hetalt
97.1523
94.5503
99.9016
36.5262
8085466812388
100.0000
ciseli-customSNPtvmap_l100_m2_e0homalt
89.1677
87.8120
90.5658
64.9670
809111238083842633
75.1781
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7354
96.2302
99.2883
62.1142
809231780925849
84.4828
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
71.3041
72.8754
69.7991
45.2762
809530131062945993296
71.6678
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7078
96.2897
99.1684
59.0884
809731281096856
82.3529
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8307
96.4864
99.2129
59.5573
810129580676455
85.9375
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.7620
87.2242
99.0507
45.1542
8104118727132626
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.7620
87.2242
99.0507
45.1542
8104118727132626
100.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
65.2473
96.5460
49.2736
54.6440
8106290814083808238
98.3055
jli-customSNPtimap_l125_m0_e0het
98.6256
98.1363
99.1199
71.4709
810915481097225
34.7222
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.9782
96.4324
99.5745
60.1289
810930081903513
37.1429
ckim-vqsrINDELI6_15HG002compoundhet*
94.2580
92.3997
96.1926
36.2881
81096678110321319
99.3769
ltrigg-rtg2INDELI6_15HG002compoundhethetalt
97.3702
95.0217
99.8378
29.8617
811242580011312
92.3077
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5003
97.0335
90.2153
59.9508
81122488086877859
97.9475
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.5003
97.0335
90.2153
59.9508
81122488086877859
97.9475
jmaeng-gatkSNPtimap_l125_m0_e0*
77.0171
63.5715
97.6758
88.7194
81134649811119322
11.3990
ckim-gatkINDELI6_15HG002compoundhet*
94.2778
92.4567
96.1721
36.2689
81146628115323321
99.3808
ckim-gatkSNPtimap_l125_m0_e0*
77.0822
63.5950
97.8298
88.5344
81164646811418023
12.7778
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
48.8008
44.4493
54.0968
38.3719
811610143806868466736
98.3932
qzeng-customSNPtvmap_l125_m2_e1het
85.6436
76.9070
96.6195
86.8249
811624378117284231
81.3380
ciseli-customSNPtvmap_l150_m2_e0*
76.6548
71.4839
82.6322
82.1021
8117323881121705399
23.4018
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
91.7864
97.0356
87.0760
55.5089
8118248811212041184
98.3389
egarrison-hhgaSNPtimap_l125_m0_e0het
98.9821
98.2694
99.7053
75.9224
812014381202410
41.6667
gduggal-bwafbSNPtimap_l125_m0_e0het
98.2879
98.3057
98.2700
78.1213
8123140812314344
30.7692
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4365
97.1073
54.0383
40.3757
81242421174999939948
99.5497
ltrigg-rtg2INDELI6_15*hetalt
97.3347
95.0298
99.7542
44.1554
812642581162019
95.0000
ghariani-varprowlSNPtimap_l125_m0_e0het
96.8041
98.4267
95.2342
81.7798
8133130813340798
24.0786
ckim-gatkSNPtvmap_l125_m1_e0het
87.4351
80.3377
95.9080
87.2955
81351991813334714
4.0346
raldana-dualsentieonSNPtimap_l125_m0_e0het
98.3262
98.4751
98.1776
75.7875
813712681351511
0.6623