PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
77201-77250 / 86044 show all
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8433
99.9572
60.4236
700811700432
66.6667
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8006
99.8575
99.7437
62.4217
7009107005183
16.6667
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9073
99.8718
99.9429
60.7832
70109700643
75.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
92.8220
96.7435
89.2061
36.1513
70112367000847807
95.2774
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8860
99.9144
60.6431
70118700763
50.0000
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.7540
99.8860
99.6224
56.8960
7011868592611
42.3077
ltrigg-rtg1SNPtvmap_l100_m0_e0het
98.3382
97.0922
99.6165
55.2134
70122107013274
14.8148
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8860
99.9003
99.8718
61.7413
70127701391
11.1111
gduggal-snapvardSNPtvmap_l100_m0_e0het
88.9755
97.1199
82.0913
81.3435
70142086995152680
5.2425
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
67.7487
63.3008
72.8688
42.9423
70154067697525972576
99.1914
jli-customSNP*map_l250_m1_e0*
98.1678
97.1891
99.1664
85.6613
701920370195929
49.1525
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.2050
96.8677
97.5447
33.7225
70202277032177164
92.6554
ghariani-varprowlSNP*map_l250_m1_e0*
95.4295
97.2861
93.6425
90.9971
7026196702647784
17.6101
gduggal-bwafbSNP*map_l250_m1_e0*
97.6861
97.3276
98.0471
89.3479
7029193702914038
27.1429
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
81.2248
74.4026
89.4244
27.1457
703724217644904893
98.7832
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
cchapple-customSNPtvmap_l100_m0_e0het
95.4613
97.4522
93.5501
77.1681
7038184704948683
17.0782
gduggal-snapfbSNPtvmap_l100_m0_e0het
95.8604
97.4661
94.3068
70.6611
70391837040425163
38.3529
ltrigg-rtg1SNPtvmap_l150_m2_e0het
98.3588
97.1042
99.6461
64.9467
70422107040254
16.0000
gduggal-bwavardSNP*map_l250_m1_e0*
90.1392
97.5353
83.7857
91.6472
70441786976135042
3.1111
ckim-dragenSNP*map_l250_m1_e0*
97.2004
97.5768
96.8269
89.0554
7047175704923129
12.5541
cchapple-customSNPtvmap_l150_m2_e0het
95.1992
97.1870
93.2911
82.3459
7048204706450883
16.3386
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
92.6853
87.1155
99.0159
25.1484
7052104372447268
94.4444
gduggal-snapvardSNPtvmap_l150_m2_e0het
88.6343
97.2835
81.3975
85.0700
70551977036160895
5.9080
jpowers-varprowlSNPtvmap_l150_m2_e1het
95.8056
96.0533
95.5592
83.3978
7058290705832876
23.1707
egarrison-hhgaSNP*map_l250_m1_e0*
98.6376
97.7430
99.5487
87.7148
705916370593215
46.8750
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.4083
95.5986
99.2879
34.0400
705932515476111102
91.8919
jlack-gatkSNP*map_l250_m1_e0*
93.2444
97.7569
89.1302
92.5027
7060162706086166
7.6655
cchapple-customSNPtimap_l150_m1_e0homalt
98.1515
96.3832
99.9858
66.0349
7062265706011
100.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0het
98.6590
97.7984
99.5349
67.9349
706315970633313
39.3939
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.2828
75.9897
97.1657
76.5450
706422327062206204
99.0291
gduggal-bwafbINDEL*map_siren*
96.8227
95.3306
98.3622
80.8381
7064346714711950
42.0168
rpoplin-dv42SNP*map_l250_m1_e0*
98.2210
97.8538
98.5910
87.3689
7067155706710166
65.3465
gduggal-snapfbSNPtvmap_l150_m2_e0het
95.8184
97.4766
94.2156
77.2326
70691837069434174
40.0922
qzeng-customSNPtvmap_l100_m1_e0homalt
87.4842
78.2705
99.1566
59.7237
7078196570546060
100.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.5249
95.8559
99.2531
52.1381
707830670435340
75.4717
ndellapenna-hhgaSNPtvmap_l150_m2_e0het
98.5727
97.6145
99.5500
73.8403
707917370793213
40.6250
raldana-dualsentieonSNP*map_l250_m1_e0*
98.0609
98.0338
98.0881
87.5648
708014270801386
4.3478
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.1088
95.8830
98.3664
54.5270
70803047045117113
96.5812
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.5934
95.8965
99.3515
52.0127
708130370474640
86.9565
asubramanian-gatkSNPtvmap_l100_m2_e1het
61.4944
44.4347
99.8167
88.7261
708288567080132
15.3846
ltrigg-rtg2SNPtvmap_l150_m2_e1het
98.0696
96.4480
99.7466
60.6896
70872617085181
5.5556
gduggal-bwavardSNPtvmap_l100_m0_e0het
91.6040
98.1446
85.8808
81.9878
70881347074116345
3.8693
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
94.5664
97.8336
91.5103
35.6834
70901577071656646
98.4756
dgrover-gatkSNP*map_l250_m1_e0*
98.3434
98.2276
98.4594
89.8378
7094128709411129
26.1261
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.6745
96.2080
99.1864
53.3595
710428070715853
91.3793
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
92.5582
86.9571
98.9306
27.1355
7107106673087975
94.9367
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
62.6517
96.2893
46.4314
47.0193
7110274714382418121
98.5439
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385