PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
77101-77150 / 86044 show all
dgrover-gatkSNPtvmap_l150_m1_e0het
98.7950
99.1650
98.4277
80.3450
688858688611020
18.1818
ciseli-customSNPtvmap_l125_m1_e0het
74.2570
68.0229
81.7491
80.4845
688832386889153857
3.7061
astatham-gatkSNPtimap_l150_m0_e0*
93.2170
87.6733
99.5090
82.5398
689296968903415
44.1176
ckim-vqsrSNPtvmap_l125_m1_e0het
80.4152
68.0822
98.2049
89.2490
6894323268931261
0.7937
ltrigg-rtg1SNP*map_l250_m1_e0*
97.5589
95.4583
99.7540
82.3017
68943286894179
52.9412
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.3899
98.2619
98.5182
61.1046
6897122684810331
30.0971
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
50.1162
0.0000
0.0000
68986866000
bgallagher-sentieonSNPtvmap_l150_m1_e0het
98.5918
99.3090
97.8850
78.8267
689848689614920
13.4228
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
76.3332
62.1432
98.9213
34.8317
6901420465117164
90.1408
gduggal-bwafbINDELD6_15HG002compoundhethetalt
91.1254
84.6645
98.6540
40.8708
6901125012461717
100.0000
anovak-vgSNP*func_cdshomalt
99.1150
98.8967
99.3342
20.4124
69027768634641
89.1304
mlin-fermikitINDELD1_5*hetalt
80.4314
67.3987
99.7126
64.5076
6905334069392020
100.0000
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.2107
98.4898
99.9421
60.9841
6913106691042
50.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.2475
93.6213
99.0253
42.3352
69134711259812472
58.0645
ckim-gatkSNP*map_l150_m0_e0*
72.2501
57.4634
97.2832
92.5200
69145118691119326
13.4715
gduggal-bwavardSNP*func_cdshomalt
99.5466
99.0973
100.0000
21.7886
691663687400
gduggal-snapvardSNP*func_cdshomalt
99.5466
99.1259
99.9709
21.8523
691861687522
100.0000
cchapple-customSNP*map_l250_m1_e0*
96.0890
95.7906
96.3892
89.6069
6918304691425962
23.9382
gduggal-bwafbINDELD6_15*hetalt
90.9853
84.6464
98.3504
52.1249
6919125512522121
100.0000
jmaeng-gatkSNP*map_l150_m0_e0*
72.2268
57.5050
97.0803
92.6384
69195113691620823
11.0577
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
55.8292
50.1922
62.8926
42.4297
69196866684940413720
92.0564
gduggal-bwaplatSNP*func_cdshomalt
99.5972
99.1976
100.0000
22.2746
692356692300
gduggal-bwaplatSNPtvmap_l125_m2_e1het
78.9711
65.6022
99.1834
90.4624
6923363069235713
22.8070
eyeh-varpipeSNPtvmap_l150_m1_e0het
96.1715
99.6977
92.8862
79.2854
692521685552511
2.0952
ckim-gatkSNPtimap_l125_m1_e0homalt
77.0788
62.7343
99.9279
73.7914
69294116692954
80.0000
gduggal-snapfbSNPtimap_l150_m1_e0homalt
97.0877
94.6363
99.6694
78.6440
693439369352314
60.8696
gduggal-snapplatSNP*func_cdshomalt
99.7054
99.4269
99.9856
21.7587
693940693911
100.0000
asubramanian-gatkSNP*func_cdshomalt
99.7270
99.4555
100.0000
21.4908
694138694100
astatham-gatkSNP*map_l250_m2_e1*
92.6875
86.9663
99.2144
90.7902
6946104169465519
34.5455
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.4418
98.9742
99.9138
61.4203
694772695363
50.0000
ckim-vqsrSNP*func_cdshomalt
99.7774
99.5558
100.0000
21.6155
694831694800
jpowers-varprowlSNPtvmap_l100_m0_e0het
95.8224
96.2337
95.4146
78.9693
6950272695033477
23.0539
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.8306
94.1224
99.6991
48.9729
695043469592110
47.6190
gduggal-snapplatSNP*map_l150_m0_e0het
89.5077
87.5441
91.5613
90.3664
69519896955641350
54.6022
ckim-isaacSNP*lowcmp_SimpleRepeat_triTR_11to50*
96.8519
94.5071
99.3160
27.2218
695140469704831
64.5833
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.2932
99.0454
99.5422
62.8527
6952676958324
12.5000
jmaeng-gatkSNPtimap_l125_m1_e0homalt
77.2828
62.9878
99.9713
72.8260
69574088695722
100.0000
jmaeng-gatkSNP*func_cdshomalt
99.8852
99.7707
100.0000
21.6496
696316696300
ckim-gatkSNP*func_cdshomalt
99.8852
99.7707
100.0000
21.5790
696316696300
jpowers-varprowlSNPtvmap_l150_m2_e0het
95.7712
96.0287
95.5150
83.3577
6964288696432776
23.2416
ltrigg-rtg2SNPtvmap_l100_m0_e0het
98.0155
96.4276
99.6566
50.1035
69642586965241
4.1667
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
49.6365
0.0000
0.0000
69657067000
mlin-fermikitSNP*func_cdshomalt
99.5356
99.8137
99.2590
20.0683
69661369665248
92.3077
gduggal-bwaplatSNPtiHG002compoundhethomalt
96.4038
94.2115
98.7006
34.6979
696642869129182
90.1099
qzeng-customSNP*func_cdshomalt
99.8779
99.8281
99.9278
20.5349
696712691853
60.0000
ciseli-customSNP*func_cdshomalt
99.2844
99.8567
98.7187
22.2148
69691069349038
42.2222
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.4653
94.4068
92.5425
38.8281
6971413142211146906
79.0576
ltrigg-rtg2SNP*func_cdshomalt
99.9642
99.9284
100.0000
21.6932
69745697400
astatham-gatkSNP*func_cdshomalt
99.9642
99.9284
100.0000
20.9745
69745697400