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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1539 1540 1541 1542 1543 1544 1545 1546 1547 ... 1720 1721 » 77101-77150 / 86044 show all
dgrover-gatk	SNP	tv	map_l150_m1_e0	het	98.7950	99.1650	98.4277	80.3450	6888	58	6886	110	20	18.1818
ciseli-custom	SNP	tv	map_l125_m1_e0	het	74.2570	68.0229	81.7491	80.4845	6888	3238	6889	1538	57	3.7061
astatham-gatk	SNP	ti	map_l150_m0_e0	*	93.2170	87.6733	99.5090	82.5398	6892	969	6890	34	15	44.1176
ckim-vqsr	SNP	tv	map_l125_m1_e0	het	80.4152	68.0822	98.2049	89.2490	6894	3232	6893	126	1	0.7937
ltrigg-rtg1	SNP	*	map_l250_m1_e0	*	97.5589	95.4583	99.7540	82.3017	6894	328	6894	17	9	52.9412
gduggal-snapvard	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.3899	98.2619	98.5182	61.1046	6897	122	6848	103	31	30.0971
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	50.1162	0.0000	0.0000	6898	6866	0	0	0
bgallagher-sentieon	SNP	tv	map_l150_m1_e0	het	98.5918	99.3090	97.8850	78.8267	6898	48	6896	149	20	13.4228
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	76.3332	62.1432	98.9213	34.8317	6901	4204	6511	71	64	90.1408
gduggal-bwafb	INDEL	D6_15	HG002compoundhet	hetalt	91.1254	84.6645	98.6540	40.8708	6901	1250	1246	17	17	100.0000
anovak-vg	SNP	*	func_cds	homalt	99.1150	98.8967	99.3342	20.4124	6902	77	6863	46	41	89.1304
mlin-fermikit	INDEL	D1_5	*	hetalt	80.4314	67.3987	99.7126	64.5076	6905	3340	6939	20	20	100.0000
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2107	98.4898	99.9421	60.9841	6913	106	6910	4	2	50.0000
gduggal-bwafb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.2475	93.6213	99.0253	42.3352	6913	471	12598	124	72	58.0645
ckim-gatk	SNP	*	map_l150_m0_e0	*	72.2501	57.4634	97.2832	92.5200	6914	5118	6911	193	26	13.4715
gduggal-bwavard	SNP	*	func_cds	homalt	99.5466	99.0973	100.0000	21.7886	6916	63	6874	0	0
gduggal-snapvard	SNP	*	func_cds	homalt	99.5466	99.1259	99.9709	21.8523	6918	61	6875	2	2	100.0000
cchapple-custom	SNP	*	map_l250_m1_e0	*	96.0890	95.7906	96.3892	89.6069	6918	304	6914	259	62	23.9382
gduggal-bwafb	INDEL	D6_15	*	hetalt	90.9853	84.6464	98.3504	52.1249	6919	1255	1252	21	21	100.0000
jmaeng-gatk	SNP	*	map_l150_m0_e0	*	72.2268	57.5050	97.0803	92.6384	6919	5113	6916	208	23	11.0577
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	55.8292	50.1922	62.8926	42.4297	6919	6866	6849	4041	3720	92.0564
gduggal-bwaplat	SNP	*	func_cds	homalt	99.5972	99.1976	100.0000	22.2746	6923	56	6923	0	0
gduggal-bwaplat	SNP	tv	map_l125_m2_e1	het	78.9711	65.6022	99.1834	90.4624	6923	3630	6923	57	13	22.8070
eyeh-varpipe	SNP	tv	map_l150_m1_e0	het	96.1715	99.6977	92.8862	79.2854	6925	21	6855	525	11	2.0952
ckim-gatk	SNP	ti	map_l125_m1_e0	homalt	77.0788	62.7343	99.9279	73.7914	6929	4116	6929	5	4	80.0000
gduggal-snapfb	SNP	ti	map_l150_m1_e0	homalt	97.0877	94.6363	99.6694	78.6440	6934	393	6935	23	14	60.8696
gduggal-snapplat	SNP	*	func_cds	homalt	99.7054	99.4269	99.9856	21.7587	6939	40	6939	1	1	100.0000
asubramanian-gatk	SNP	*	func_cds	homalt	99.7270	99.4555	100.0000	21.4908	6941	38	6941	0	0
astatham-gatk	SNP	*	map_l250_m2_e1	*	92.6875	86.9663	99.2144	90.7902	6946	1041	6946	55	19	34.5455
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4418	98.9742	99.9138	61.4203	6947	72	6953	6	3	50.0000
ckim-vqsr	SNP	*	func_cds	homalt	99.7774	99.5558	100.0000	21.6155	6948	31	6948	0	0
jpowers-varprowl	SNP	tv	map_l100_m0_e0	het	95.8224	96.2337	95.4146	78.9693	6950	272	6950	334	77	23.0539
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.8306	94.1224	99.6991	48.9729	6950	434	6959	21	10	47.6190
gduggal-snapplat	SNP	*	map_l150_m0_e0	het	89.5077	87.5441	91.5613	90.3664	6951	989	6955	641	350	54.6022
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	96.8519	94.5071	99.3160	27.2218	6951	404	6970	48	31	64.5833
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2932	99.0454	99.5422	62.8527	6952	67	6958	32	4	12.5000
jmaeng-gatk	SNP	ti	map_l125_m1_e0	homalt	77.2828	62.9878	99.9713	72.8260	6957	4088	6957	2	2	100.0000
jmaeng-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.6496	6963	16	6963	0	0
ckim-gatk	SNP	*	func_cds	homalt	99.8852	99.7707	100.0000	21.5790	6963	16	6963	0	0
jpowers-varprowl	SNP	tv	map_l150_m2_e0	het	95.7712	96.0287	95.5150	83.3577	6964	288	6964	327	76	23.2416
ltrigg-rtg2	SNP	tv	map_l100_m0_e0	het	98.0155	96.4276	99.6566	50.1035	6964	258	6965	24	1	4.1667
ckim-isaac	SNP	tv	HG002compoundhet	*	85.3990	78.0567	94.2659	45.8825	6965	1958	7217	439	382	87.0159
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	49.6365	0.0000	0.0000	6965	7067	0	0	0
mlin-fermikit	SNP	*	func_cds	homalt	99.5356	99.8137	99.2590	20.0683	6966	13	6966	52	48	92.3077
gduggal-bwaplat	SNP	ti	HG002compoundhet	homalt	96.4038	94.2115	98.7006	34.6979	6966	428	6912	91	82	90.1099
qzeng-custom	SNP	*	func_cds	homalt	99.8779	99.8281	99.9278	20.5349	6967	12	6918	5	3	60.0000
ciseli-custom	SNP	*	func_cds	homalt	99.2844	99.8567	98.7187	22.2148	6969	10	6934	90	38	42.2222
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.4653	94.4068	92.5425	38.8281	6971	413	14221	1146	906	79.0576
ltrigg-rtg2	SNP	*	func_cds	homalt	99.9642	99.9284	100.0000	21.6932	6974	5	6974	0	0
astatham-gatk	SNP	*	func_cds	homalt	99.9642	99.9284	100.0000	20.9745	6974	5	6974	0	0

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