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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
76951-77000 / 86044 show all
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
98.2925
97.1972
99.4127
32.2154
669319367714040
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.6131
99.4059
99.8211
49.8317
6693406695127
58.3333
eyeh-varpipeSNP*map_l125_m0_e0homalt
99.7810
99.7318
99.8302
73.0404
6694186469115
45.4545
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7468
99.7171
99.7766
54.5091
6697196699158
53.3333
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7691
99.7171
99.8211
53.8271
6697196696127
58.3333
ciseli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
96.7305
99.3032
94.2877
46.8635
6698476685405129
31.8519
jlack-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.5542
99.4802
99.6283
49.3638
66983567002514
56.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4656
99.3180
99.6136
37.1650
66994667032625
96.1538
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7024
99.7469
99.6579
53.4220
6699176701238
34.7826
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8082
94.2070
99.5571
26.7517
670041267443030
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6877
99.7767
99.5988
53.6597
6701156703278
29.6296
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8156
94.2210
99.5572
26.7488
670141167453030
100.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.6951
99.7767
99.6136
53.1211
6701156703269
34.6154
eyeh-varpipeSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1428
99.3625
98.9241
34.6525
67024364367024
34.2857
jpowers-varprowlINDEL*map_siren*
91.5569
90.4453
92.6961
81.8403
67027086701528440
83.3333
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.7099
99.7915
99.6285
54.4538
6702146704258
32.0000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.8309
99.3772
98.2905
53.9062
67024267271176
5.1282
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
77.1982
70.9029
84.7203
46.8070
67062752683112321026
83.2792
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4212
93.4764
99.5575
27.4245
670646867503029
96.6667
egarrison-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6287
99.4366
99.8215
36.6123
67073867091210
83.3333
ckim-vqsrSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2237
99.4958
98.9530
45.8387
6710346710711
1.4085
anovak-vgSNPtvHG002compoundhet*
74.6577
75.2101
74.1133
50.0629
67112212706324671646
66.7207
ckim-dragenINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.6954
99.6733
99.7175
49.5386
67112267071912
63.1579
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4722
93.5461
99.5872
27.3535
671146367552828
100.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
77.6408
64.0764
98.4903
40.8685
6712376362639686
89.5833
mlin-fermikitSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3026
99.5107
97.1234
41.8851
6712336719199180
90.4523
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7548
99.6881
99.8216
48.8361
6712216714128
66.6667
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.0969
99.5403
98.6573
40.9208
6713316760921
1.0870
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6740
93.5880
99.9704
27.5688
6714460675821
50.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.9728
99.5552
98.3972
40.4460
67143067531105
4.5455
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7994
99.7475
99.8514
49.4629
6716176718106
60.0000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
53.7666
97.5737
37.1070
80.0383
6716167688011661159
1.3635
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6500
99.6294
99.6706
40.2309
67202566562211
50.0000
ltrigg-rtg2SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7995
99.6294
99.9702
32.6604
672025670321
50.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6590
100.0000
35.1158
672223672200
jmaeng-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6738
99.9851
35.1779
672322672311
100.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4232
99.6886
99.1593
46.1734
6723216723571
1.7544
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9798
94.5444
99.5441
27.3611
672438867683130
96.7742
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2183
99.7479
98.6942
45.7109
6727176727892
2.2472
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
98.5569
99.7479
97.3939
48.1612
67271767271803
1.6667
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50het
96.5155
99.7628
93.4730
54.4025
672816655945833
7.2052
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
74.5401
60.5690
96.8890
74.8497
67284380672721642
19.4444
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.2341
97.7771
98.6954
80.9079
673015367338929
32.5843
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.6674
99.7924
99.5426
42.2165
6730146747312
6.4516
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4328
99.7924
99.0758
46.4998
6730146754636
9.5238
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.8389
0.0000
0.0000
6732442000
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8441
99.8073
99.8810
33.7603
673213671481
12.5000
gduggal-snapplatSNPtimap_l150_m2_e1homalt
93.2871
87.5211
99.8663
73.9142
6733960672499
100.0000