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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
76601-76650 / 86044 show all
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.4551
92.2272
86.8448
82.4170
634853567601024420
41.0156
rpoplin-dv42INDELD16_PLUS**
94.4399
93.5879
95.3076
64.2354
63494356337312290
92.9487
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5092
75.5024
90.9494
56.1947
634920606351632617
97.6266
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6258
94.3116
94.9422
66.8176
63503836401341317
92.9619
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2201
93.2179
99.4222
33.5409
635046263673731
83.7838
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.8906
94.5652
97.2537
40.0019
63513656268177104
58.7571
ckim-isaacINDEL*lowcmp_SimpleRepeat_triTR_11to50*
96.2675
94.3265
98.2901
38.7683
6351382632311070
63.6364
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50*
94.6955
94.4156
94.9771
66.7371
63573766429340300
88.2353
jpowers-varprowlSNPtvmap_l125_m0_e0*
95.8974
95.8830
95.9119
81.8721
6358273635827170
25.8303
gduggal-snapvardSNP*map_l125_m0_e0homalt
97.1180
94.7259
99.6341
71.0042
635835462632318
78.2609
qzeng-customINDEL*map_siren*
89.0924
85.8165
92.6283
83.9353
635910516823543116
21.3628
ciseli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
72.3054
87.8570
61.4314
34.0186
6367880630939613654
92.2494
gduggal-snapvardSNPtvmap_l125_m0_e0*
89.3998
96.0489
83.6117
82.4411
63692626357124662
4.9759
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.3405
95.3885
93.3153
37.1067
637130812759914716
78.3370
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.3224
95.8089
92.8813
84.3204
6378279631548493
19.2149
gduggal-bwafbINDELI6_15HG002compoundhet*
80.9656
72.6869
91.3725
27.9246
637923977403699688
98.4263
gduggal-snapplatSNPtimap_l150_m1_e0homalt
93.0222
87.0616
99.8589
71.6753
6379948637099
100.0000
ckim-isaacSNP*map_l150_m0_e0*
69.2458
53.0336
99.7343
81.0939
638156516381174
23.5294
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
85.4215
78.1353
94.2062
35.5484
63861787206512767
52.7559
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.6677
96.0493
95.2892
79.6573
63942636392316202
63.9241
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.4780
89.9466
99.4903
27.1930
639771564413328
84.8485
ltrigg-rtg2SNPtvmap_l125_m0_e0*
98.1288
96.4862
99.8283
59.5773
63982336396110
0.0000
cchapple-customSNPtvmap_l125_m0_e0*
95.8633
96.5164
95.2189
78.5014
6400231639332156
17.4455
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
76.5644
95.3537
63.9609
48.2339
64033121048059054553
77.1041
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
68.0380
93.0844
53.6124
81.3886
64074766493561890
1.6020
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
75.2916
86.8093
66.4721
57.3739
6410974683434471755
50.9138
gduggal-bwaplatSNP*map_l125_m0_e0het
67.0117
50.6238
99.0887
93.0436
6411625364155919
32.2034
cchapple-customSNP*map_l125_m0_e0homalt
97.7145
95.5453
99.9844
64.7518
6413299641111
100.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.6982
92.8933
98.6777
52.9173
641849164188675
87.2093
ltrigg-rtg1INDELD16_PLUS**
96.8429
94.6197
99.1732
57.6142
641936563575336
67.9245
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
97.4799
95.1964
99.8756
26.6788
6421324642387
87.5000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
40.1009
36.3420
44.7271
57.2051
642211249641779307870
99.2434
anovak-vgSNPtimap_l150_m0_e0*
77.7546
81.7199
74.1564
85.3644
6424143763732221611
27.5101
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.8138
96.2869
99.3900
32.9111
6431248136868481
96.4286
gduggal-snapvardINDELD1_5HG002compoundhethetalt
0.0000
62.9699
0.0000
0.0000
64333783000
ltrigg-rtg2INDELD16_PLUS**
96.9914
94.9292
99.1450
56.0917
644034463785535
63.6364
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1063
94.3753
100.0000
23.8971
6443384645200
anovak-vgSNP*map_l250_m2_e0*
75.1311
81.7121
69.5312
91.5463
6443144263922801650
23.2060
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.9389
94.3899
99.6295
24.2810
644438364532424
100.0000
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.4660
96.4965
98.4552
52.4855
6445234643710199
98.0198
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.8735
96.4965
99.2905
49.4936
644523464374635
76.0870
gduggal-snapvardINDELD1_5*hetalt
0.0000
62.9283
0.0000
0.0000
64473798000
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9644
96.5713
99.3983
49.3594
645022964433935
89.7436
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2112
93.3565
99.2459
50.4272
645045964494944
89.7959
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.7409
93.7237
97.8469
79.8823
6451432645314216
11.2676
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.4663
89.9219
99.4945
27.8754
645172364953328
84.8485
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
70.3858
62.2960
80.8903
55.0300
64523905781418461272
68.9057
ltrigg-rtg1SNPtvmap_l125_m0_e0*
98.4887
97.3006
99.7063
64.1567
64521796450194
21.0526
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.6924
96.0989
95.2894
42.1888
64542626453319300
94.0439