PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76451-76500 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0073 | 98.6439 | 99.3734 | 43.8166 | 6183 | 85 | 6185 | 39 | 38 | 97.4359 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2624 | 99.1501 | 99.3749 | 64.2935 | 6183 | 53 | 6200 | 39 | 5 | 12.8205 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.1182 | 98.6758 | 99.5645 | 45.6045 | 6185 | 83 | 6173 | 27 | 13 | 48.1481 | |
| egarrison-hhga | INDEL | D6_15 | * | homalt | 96.8232 | 97.8027 | 95.8630 | 51.8789 | 6187 | 139 | 6187 | 267 | 86 | 32.2097 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3498 | 98.7237 | 99.9839 | 45.5999 | 6188 | 80 | 6193 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3904 | 99.2623 | 99.5188 | 66.4857 | 6190 | 46 | 6205 | 30 | 5 | 16.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.0705 | 92.7235 | 83.8622 | 38.1946 | 6193 | 486 | 6184 | 1190 | 1162 | 97.6471 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 56.5705 | 40.1699 | 95.6035 | 76.3129 | 6193 | 9224 | 10155 | 467 | 451 | 96.5739 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 46.1868 | 42.3753 | 50.7516 | 72.8442 | 6194 | 8423 | 7833 | 7601 | 1738 | 22.8654 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 83.3290 | 92.2710 | 75.9669 | 53.2043 | 6196 | 519 | 6246 | 1976 | 523 | 26.4676 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | homalt | 72.1476 | 66.6523 | 78.6303 | 53.6694 | 6200 | 3102 | 6200 | 1685 | 1598 | 94.8368 | |
| ckim-isaac | SNP | ti | HG002compoundhet | homalt | 91.0386 | 83.8788 | 99.5347 | 26.2921 | 6202 | 1192 | 6203 | 29 | 24 | 82.7586 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.0389 | 96.6511 | 99.4672 | 62.4367 | 6205 | 215 | 11948 | 64 | 47 | 73.4375 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.0389 | 96.6511 | 99.4672 | 62.4367 | 6205 | 215 | 11948 | 64 | 47 | 73.4375 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4314 | 99.5510 | 99.3121 | 70.6126 | 6208 | 28 | 6208 | 43 | 21 | 48.8372 | |
| hfeng-pmm3 | INDEL | I6_15 | * | homalt | 98.2839 | 99.5993 | 97.0028 | 48.9358 | 6214 | 25 | 6214 | 192 | 191 | 99.4792 | |
| hfeng-pmm1 | INDEL | I6_15 | * | homalt | 98.1442 | 99.5993 | 96.7310 | 48.9389 | 6214 | 25 | 6214 | 210 | 209 | 99.5238 | |
| cchapple-custom | INDEL | I6_15 | * | homalt | 98.0872 | 99.5993 | 96.6202 | 48.7819 | 6214 | 25 | 6175 | 216 | 214 | 99.0741 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7112 | 99.6472 | 99.7752 | 70.6918 | 6214 | 22 | 6214 | 14 | 12 | 85.7143 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5515 | 99.1544 | 99.9518 | 47.1169 | 6215 | 53 | 6215 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6872 | 99.6632 | 99.7112 | 69.9339 | 6215 | 21 | 6215 | 18 | 12 | 66.6667 | |
| hfeng-pmm2 | INDEL | I6_15 | * | homalt | 98.0364 | 99.6314 | 96.4918 | 51.1007 | 6216 | 23 | 6216 | 226 | 223 | 98.6726 | |
| jlack-gatk | INDEL | I6_15 | * | homalt | 95.8674 | 99.6474 | 92.3637 | 53.5505 | 6217 | 22 | 6217 | 514 | 507 | 98.6381 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | hetalt | 82.7582 | 72.8242 | 95.8306 | 40.7336 | 6217 | 2320 | 1471 | 64 | 63 | 98.4375 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7273 | 99.7114 | 99.7433 | 70.7941 | 6218 | 18 | 6218 | 16 | 11 | 68.7500 | |
| jli-custom | INDEL | I6_15 | * | homalt | 98.3861 | 99.6634 | 97.1411 | 49.1984 | 6218 | 21 | 6218 | 183 | 180 | 98.3607 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4365 | 96.8847 | 97.9946 | 71.7201 | 6220 | 200 | 6206 | 127 | 19 | 14.9606 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4365 | 96.8847 | 97.9946 | 71.7201 | 6220 | 200 | 6206 | 127 | 19 | 14.9606 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7595 | 99.7595 | 70.6652 | 6221 | 15 | 6221 | 15 | 12 | 80.0000 | |
| ckim-dragen | INDEL | I6_15 | * | homalt | 96.6294 | 99.7115 | 93.7321 | 54.6498 | 6221 | 18 | 6221 | 416 | 414 | 99.5192 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7361 | 99.7595 | 99.7127 | 70.2512 | 6221 | 15 | 6248 | 18 | 14 | 77.7778 | |
| raldana-dualsentieon | INDEL | I6_15 | * | homalt | 97.3324 | 99.7115 | 95.0642 | 52.3622 | 6221 | 18 | 6221 | 323 | 318 | 98.4520 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6796 | 99.7755 | 99.5839 | 69.4549 | 6222 | 14 | 6222 | 26 | 19 | 73.0769 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7755 | 99.7435 | 70.4864 | 6222 | 14 | 6222 | 16 | 12 | 75.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6158 | 99.2821 | 99.9518 | 44.5938 | 6223 | 45 | 6223 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7675 | 99.7915 | 99.7435 | 70.0911 | 6223 | 13 | 6223 | 16 | 12 | 75.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 66.9535 | 0.0000 | 0.0000 | 6224 | 3072 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | * | homalt | 97.4945 | 99.7916 | 95.3008 | 55.3726 | 6226 | 13 | 6226 | 307 | 303 | 98.6971 | |
| gduggal-bwafb | INDEL | I6_15 | * | hetalt | 81.7221 | 72.8336 | 93.0818 | 54.0993 | 6228 | 2323 | 1480 | 110 | 109 | 99.0909 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | homalt | 99.1477 | 98.4508 | 99.8545 | 42.0407 | 6228 | 98 | 6177 | 9 | 7 | 77.7778 | |
| astatham-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.9107 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| dgrover-gatk | INDEL | I6_15 | * | homalt | 97.7715 | 99.8557 | 95.7725 | 55.4177 | 6230 | 9 | 6230 | 275 | 272 | 98.9091 | |
| ckim-vqsr | INDEL | I6_15 | * | homalt | 97.7408 | 99.8557 | 95.7136 | 54.8957 | 6230 | 9 | 6230 | 279 | 277 | 99.2832 | |
| ckim-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.8919 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| bgallagher-sentieon | INDEL | I6_15 | * | homalt | 97.0258 | 99.8718 | 94.3376 | 54.5892 | 6231 | 8 | 6231 | 374 | 371 | 99.1979 | |
| rpoplin-dv42 | INDEL | D6_15 | * | homalt | 99.1567 | 98.5141 | 99.8078 | 51.4461 | 6232 | 94 | 6233 | 12 | 7 | 58.3333 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9986 | 97.0872 | 98.9273 | 73.5231 | 6233 | 187 | 7378 | 80 | 61 | 76.2500 | |