PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
76351-76400 / 86044 show all
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9425
99.9507
99.9343
54.5644
60853608844
100.0000
mlin-fermikitSNP*map_l150_m2_e0homalt
60.9384
52.0130
73.5614
61.0344
60855614608521872050
93.7357
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
93.1476
88.3677
98.4741
26.6190
608580162609790
92.7835
jlack-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9507
99.9179
54.3410
60853608555
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9589
99.9507
99.9671
54.6457
60853608522
100.0000
hfeng-pmm2SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9754
99.9671
99.9836
54.9478
60862608611
100.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9671
99.9671
99.9671
54.5909
60862608622
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9671
99.9343
54.3615
60862608644
100.0000
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7424
96.3145
99.2132
57.7581
608923360534828
58.3333
ltrigg-rtg2INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7424
96.3145
99.2132
57.7581
608923360534828
58.3333
egarrison-hhgaSNP*lowcmp_SimpleRepeat_diTR_11to50het
98.4322
97.6427
99.2345
66.5194
608914760934718
38.2979
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.6157
98.5123
98.7194
55.0135
60929260907951
64.5570
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
84.4004
74.5748
97.2080
44.1952
609520786093175173
98.8571
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7240
96.4410
99.0416
63.3898
609722560975950
84.7458
astatham-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7240
96.4410
99.0416
63.3898
609722560975950
84.7458
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.8646
85.7424
98.9282
41.1728
609810149231010
100.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.9132
85.7987
98.9660
29.1571
6102101064136758
86.5672
qzeng-customINDELI6_15*homalt
92.4648
97.8362
87.6525
43.2864
61041356105860457
53.1395
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
52.7266
38.0507
85.8309
70.4516
610699415785955426
44.6073
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8137
96.5992
99.0592
63.6797
610721561075848
82.7586
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8137
96.5992
99.0592
63.6797
610721561075848
82.7586
ndellapenna-hhgaINDELI6_15*homalt
96.8456
97.9163
95.7981
48.3646
61091306110268230
85.8209
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.0526
89.4976
99.0961
23.7208
611071762495754
94.7368
egarrison-hhgaINDELI6_15*homalt
96.9232
97.9324
95.9347
48.1653
61101296112259222
85.7143
astatham-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
98.9155
97.9955
99.8529
70.5060
6111125611198
88.8889
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
90.7313
91.0661
90.3989
49.5222
61166006685710208
29.2958
ckim-isaacSNPtvmap_l100_m0_e0*
71.0742
55.1877
99.8043
69.9269
611749676119123
25.0000
qzeng-customINDELD6_15*homalt
94.3599
96.6962
92.1338
47.6739
61172096114522246
47.1264
eyeh-varpipeINDELD1_5HG002compoundhet*
54.4680
50.0613
59.7255
65.1711
61256110609241084053
98.6611
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
jmaeng-gatkINDELI16_PLUS**
97.0081
96.0953
97.9383
71.0190
6128249612812982
63.5659
mlin-fermikitSNPtvmap_l100_m2_e0homalt
72.0127
66.5183
78.4964
53.5791
61293085612916791592
94.8183
bgallagher-sentieonINDELI16_PLUS**
97.0316
96.1110
97.9699
70.7650
61292486129127100
78.7402
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.5234
99.1268
97.9273
65.2174
613054614213033
25.3846
ciseli-customINDELI6_15**
35.4599
24.6948
62.8636
46.3768
613018693609436003400
94.4444
ckim-vqsrINDELI16_PLUS**
97.2630
96.1267
98.4265
70.8795
613024761309883
84.6939
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.6751
85.4753
98.8445
42.9599
613210429411111
100.0000
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
80.5780
99.1753
67.8540
65.4237
6133516191293343
1.4661
hfeng-pmm2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5537
99.1915
99.9186
53.5276
613450613450
0.0000
anovak-vgSNPtimap_l150_m2_e1homalt
88.4680
79.7478
99.3294
72.4334
6135155860734136
87.8049
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.7285
85.5171
98.9129
30.0899
6135103964607161
85.9155
asubramanian-gatkSNPtimap_l125_m1_e0het
50.2744
33.6034
99.7724
92.0217
6138121286136145
35.7143
gduggal-bwafbSNP*lowcmp_SimpleRepeat_diTR_11to50het
95.8251
98.5087
93.2839
75.9171
6143936167444105
23.6486
ckim-dragenINDELI16_PLUS**
97.2529
96.3306
98.1932
70.5888
6143234614111394
83.1858
eyeh-varpipeSNP*lowcmp_SimpleRepeat_diTR_11to50het
95.7234
98.5247
93.0769
67.4612
614492532439673
18.4343
ltrigg-rtg1INDELI6_15*homalt
98.7666
98.4933
99.0414
43.6510
61459460965952
88.1356
ltrigg-rtg2INDELI6_15*homalt
98.7906
98.4933
99.0897
41.6927
61459460965649
87.5000
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
97.7610
98.5407
96.9935
76.3552
614591629119548
24.6154