PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75651-75700 / 86044 show all
bgallagher-sentieonSNPtvsegduphet
99.2561
99.7541
98.7631
92.1695
5274135270660
0.0000
gduggal-snapfbSNPtifunc_cdshomalt
99.9716
99.9810
99.9621
22.5825
52741527421
50.0000
raldana-dualsentieonSNPtifunc_cdshomalt
99.9905
99.9810
100.0000
19.3825
52741527400
hfeng-pmm1SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.7037
52741527400
hfeng-pmm2SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.6798
52741527400
hfeng-pmm2SNPtvsegduphet
99.5467
99.7541
99.3402
91.9297
5274135270350
0.0000
hfeng-pmm3SNPtifunc_cdshomalt
99.9905
99.9810
100.0000
20.5962
52741527400
ckim-dragenSNPtvsegduphet
97.4236
99.7730
95.1822
94.3912
52751252752670
0.0000
dgrover-gatkSNPtvsegduphet
99.5280
99.7730
99.2842
92.5335
5275125271380
0.0000
eyeh-varpipeSNPtvsegduphet
95.3870
99.8298
91.3228
92.1659
5278951784924
0.8130
qzeng-customINDELI16_PLUS**
83.4199
82.9387
83.9068
61.2425
5289108852921015362
35.6650
gduggal-snapplatSNPtvmap_l125_m2_e0homalt
93.5527
87.9009
99.9811
71.5032
5289728529010
0.0000
ciseli-customINDEL*map_siren*
74.2881
71.4035
77.4156
83.7506
52912119529615451017
65.8252
ckim-vqsrSNPtvmap_l150_m1_e0*
64.9686
48.5062
98.3460
91.7373
529356195292890
0.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.4486
97.4071
99.5127
25.8925
529714153092625
96.1538
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
98.5228
97.5359
99.5300
31.9212
530413452942525
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9195
97.9163
99.9436
71.6321
5310113531433
100.0000
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
82.8275
71.3902
98.6286
59.1429
5320213253227414
18.9189
gduggal-bwaplatINDELD6_15*homalt
90.8801
84.1132
98.8312
57.2595
5321100553276357
90.4762
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
39.0121
35.9892
42.5893
55.2279
53219464531671667112
99.2464
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
81.2213
71.4171
94.1457
64.2321
53222130533933230
9.0361
gduggal-snapplatINDEL*map_siren*
79.6077
71.8219
89.2868
89.6136
53222088570968578
11.3869
gduggal-snapfbINDELD6_15HG002compoundhethetalt
76.8495
65.2926
93.3775
40.5512
532228298466059
98.3333
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
83.0571
91.0366
76.3636
59.1295
5322524529216381616
98.6569
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
83.0571
91.0366
76.3636
59.1295
5322524529216381616
98.6569
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.3428
82.9101
76.0698
72.6664
5322109754041700930
54.7059
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
82.2027
72.0883
95.6186
70.2749
53232061532524463
25.8197
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
68.8773
63.7081
74.9595
62.4506
53263034555018541409
75.9978
gduggal-snapfbINDELD6_15*hetalt
74.5835
65.2679
87.0010
49.2731
53352839850127126
99.2126
gduggal-bwaplatINDELI6_15*homalt
91.2395
85.5426
97.7493
57.4509
53379025342123103
83.7398
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.1639
98.4142
99.9251
72.5328
533786533744
100.0000
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.1639
98.4142
99.9251
72.5328
533786533744
100.0000
astatham-gatkSNPtvmap_l150_m1_e0het
86.7142
76.8644
99.4596
83.0624
533916075337298
27.5862
ckim-vqsrSNP*map_l125_m2_e0homalt
47.0112
30.7338
99.9439
86.8214
534012035534032
66.6667
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.5127
86.3519
84.6897
75.2304
5340844534996723
2.3785
gduggal-snapplatSNPtvmap_l125_m2_e1homalt
93.5797
87.9486
99.9813
71.5146
5342732534210
0.0000
asubramanian-gatkSNPtimap_l150_m2_e1*
40.9816
25.7878
99.7572
94.2645
5344153795342135
38.4615
gduggal-snapfbINDELD6_15*homalt
84.4844
84.4926
84.4762
53.3817
53459815322978974
99.5910
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
86.6565
78.2921
97.0220
41.1897
534514825343164163
99.3902
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.5326
87.8942
99.9440
58.7524
5351737535331
33.3333
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
89.7118
87.9829
91.5099
73.1427
53527315303492469
95.3252
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
91.8329
98.7645
85.8105
79.7572
5356675352885251
28.3616
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.8329
98.7645
85.8105
79.7572
5356675352885251
28.3616
gduggal-bwaplatSNPtvmap_l100_m2_e0homalt
73.5296
58.1398
100.0000
74.6665
53573857535600
ltrigg-rtg1INDELI16_PLUS**
90.7186
84.0050
98.5984
48.4241
5357102052767566
88.0000