PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1509 1510 1511 1512 1513 1514 1515 1516 1517 ... 1720 1721 » 75601-75650 / 86044 show all
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	83.6479	73.1252	97.7082	43.0315	5246	1928	5244	123	121	98.3740
mlin-fermikit	INDEL	D6_15	HG002compoundhet	hetalt	78.2401	64.3602	99.7528	23.4532	5246	2905	5245	13	13	100.0000
asubramanian-gatk	SNP	ti	func_cds	homalt	99.7244	99.4502	100.0000	20.1522	5246	29	5246	0	0
gduggal-bwafb	SNP	tv	segdup	het	98.1577	99.2623	97.0773	93.8623	5248	39	5248	158	6	3.7975
gduggal-snapplat	SNP	ti	func_cds	homalt	99.7435	99.5071	99.9810	20.2128	5249	26	5249	1	1	100.0000
gduggal-snapfb	SNP	tv	segdup	het	98.0225	99.3191	96.7593	93.1540	5251	36	5255	176	3	1.7046
ltrigg-rtg1	SNP	tv	segdup	het	98.5379	99.3380	97.7505	88.6829	5252	35	5258	121	1	0.8264
ckim-vqsr	SNP	ti	func_cds	homalt	99.7910	99.5829	100.0000	20.1550	5253	22	5253	0	0
ndellapenna-hhga	SNP	tv	segdup	het	99.3381	99.3569	99.3193	90.2972	5253	34	5253	36	2	5.5556
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.2699	96.6164	99.9810	27.1104	5254	184	5266	1	0	0.0000
jmaeng-gatk	SNP	tv	segdup	het	97.3848	99.3758	95.4719	95.8451	5254	33	5250	249	0	0.0000
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	76.2662	86.5448	68.1700	55.3642	5255	817	5230	2442	2103	86.1179
ltrigg-rtg2	SNP	tv	segdup	het	98.5667	99.4137	97.7340	87.6779	5256	31	5262	122	2	1.6393
egarrison-hhga	SNP	tv	segdup	het	99.4044	99.4326	99.3762	90.4305	5257	30	5257	33	2	6.0606
ghariani-varprowl	SNP	tv	segdup	het	95.9597	99.4326	92.7212	94.3028	5257	30	5261	413	3	0.7264
ckim-gatk	SNP	tv	segdup	het	98.3440	99.4704	97.2428	95.8012	5259	28	5255	149	0	0.0000
ckim-vqsr	SNP	*	map_l150_m0_e0	*	60.5419	43.7334	98.3368	94.2598	5262	6770	5262	89	0	0.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	88.0249	90.0274	86.1096	53.5183	5263	583	4761	768	648	84.3750
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	88.0249	90.0274	86.1096	53.5183	5263	583	4761	768	648	84.3750
rpoplin-dv42	SNP	tv	segdup	het	99.6497	99.5839	99.7157	91.3241	5265	22	5261	15	0	0.0000
ckim-gatk	SNP	ti	func_cds	homalt	99.9051	99.8104	100.0000	20.1183	5265	10	5265	0	0
jmaeng-gatk	SNP	ti	func_cds	homalt	99.9051	99.8104	100.0000	20.1062	5265	10	5265	0	0
mlin-fermikit	INDEL	D6_15	*	hetalt	78.2531	64.4238	99.6427	35.0794	5266	2908	5298	19	18	94.7368
mlin-fermikit	SNP	ti	func_cds	homalt	99.5745	99.8294	99.3210	18.8179	5266	9	5266	36	34	94.4444
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	92.4416	88.7728	96.4267	49.8323	5266	666	3751	139	127	91.3669
ciseli-custom	SNP	ti	func_cds	homalt	99.3195	99.8483	98.7963	20.7719	5267	8	5253	64	29	45.3125
qzeng-custom	SNP	ti	func_cds	homalt	99.8860	99.8673	99.9047	18.9998	5268	7	5243	5	3	60.0000
asubramanian-gatk	SNP	ti	map_l150_m2_e0	*	40.8545	25.6874	99.7538	94.2642	5269	15243	5267	13	5	38.4615
raldana-dualsentieon	SNP	tv	segdup	het	99.3773	99.6595	99.0966	91.7904	5269	18	5265	48	0	0.0000
ltrigg-rtg2	SNP	ti	func_cds	homalt	99.9526	99.9052	100.0000	20.2844	5270	5	5270	0	0
hfeng-pmm1	SNP	tv	segdup	het	99.6406	99.6785	99.6028	90.6534	5270	17	5266	21	0	0.0000
astatham-gatk	SNP	ti	func_cds	homalt	99.9526	99.9052	100.0000	19.7136	5270	5	5270	0	0
jli-custom	SNP	tv	segdup	het	99.3872	99.6974	99.0789	90.9422	5271	16	5271	49	0	0.0000
hfeng-pmm3	SNP	tv	segdup	het	99.6218	99.6974	99.5464	90.8847	5271	16	5267	24	0	0.0000
jlack-gatk	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.9058	5271	4	5271	0	0
cchapple-custom	SNP	ti	func_cds	homalt	99.9621	99.9242	100.0000	19.3326	5271	4	5270	0	0
bgallagher-sentieon	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.6954	5272	3	5272	0	0
dgrover-gatk	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
ghariani-varprowl	SNP	ti	func_cds	homalt	99.8769	99.9431	99.8107	21.2934	5272	3	5272	10	7	70.0000
rpoplin-dv42	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	21.4775	5272	3	5272	0	0
jlack-gatk	SNP	tv	segdup	het	96.4748	99.7163	93.4374	95.6607	5272	15	5268	370	0	0.0000
gduggal-bwafb	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	21.6059	5272	3	5272	0	0
jli-custom	SNP	ti	func_cds	homalt	99.9716	99.9431	100.0000	19.7443	5272	3	5272	0	0
jpowers-varprowl	SNP	ti	func_cds	homalt	99.9052	99.9431	99.8674	21.7810	5272	3	5272	7	7	100.0000
ltrigg-rtg1	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.7187	5273	2	5273	0	0
ndellapenna-hhga	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.8377	5273	2	5273	0	0
cchapple-custom	SNP	tv	segdup	het	99.3783	99.7352	99.0240	94.2756	5273	14	5276	52	0	0.0000
ckim-dragen	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.1424	5273	2	5273	0	0
egarrison-hhga	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.9919	5273	2	5273	0	0
eyeh-varpipe	SNP	ti	func_cds	homalt	99.9810	99.9621	100.0000	20.7688	5273	2	5215	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge