PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75551-75600 / 86044 show all
hfeng-pmm1SNP*map_l250_m2_e1het
98.5612
98.2523
98.8721
88.8393
51729251725911
18.6441
gduggal-bwaplatSNPtvsegduphet
98.3560
97.8438
98.8736
96.0991
51731145179596
10.1695
ckim-dragenINDELD6_15HG002complexvar*
97.9831
97.6047
98.3644
58.6538
517512751728683
96.5116
ciseli-customSNP*map_l250_m2_e1*
69.2947
64.8053
74.4524
92.2088
5176281151671773350
19.7406
dgrover-gatkSNP*map_l250_m2_e1het
98.1329
98.3473
97.9194
91.5436
517787517711025
22.7273
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3592
95.2372
99.5780
26.4946
517925951912222
100.0000
ltrigg-rtg2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.3739
97.4595
99.3056
60.7094
517913551483621
58.3333
ckim-gatkINDELD6_15HG002complexvar*
98.1151
97.6990
98.5347
58.5306
518012251787770
90.9091
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.3694
95.3108
99.5190
31.4561
518325551722525
100.0000
gduggal-snapplatSNPtvsegduphet
98.3319
98.0329
98.6327
95.7233
51831045194726
8.3333
bgallagher-sentieonINDELD6_15HG002complexvar*
98.0701
97.7744
98.3675
58.4379
518411851828679
91.8605
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.0075
95.3292
98.7460
27.5468
518425451976664
96.9697
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6184
95.3476
100.0000
25.5017
5185253519700
hfeng-pmm2SNP*map_l250_m2_e1het
98.1822
98.4992
97.8671
90.6974
518579518511310
8.8496
gduggal-bwaplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.5560
76.1304
97.6455
49.9717
518616265184125123
98.4000
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
59.9212
54.8636
66.0058
31.4666
51894269519426752487
92.9720
hfeng-pmm3SNP*map_l250_m2_e1het
98.7819
98.5942
98.9703
89.1221
5190745190543
5.5556
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.5129
95.5131
99.5982
26.1932
519424452062121
100.0000
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.9586
87.5042
96.8908
75.6471
519674226808685
98.8372
astatham-gatkINDELD6_15HG002complexvar*
98.3071
98.0385
98.5771
58.5385
519810451967568
90.6667
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
67.4881
62.1770
73.7913
70.7459
51983162725025751897
73.6699
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.4881
62.1770
73.7913
70.7459
51983162725025751897
73.6699
dgrover-gatkINDELD6_15HG002complexvar*
98.2978
98.0385
98.5584
58.5437
519810451967669
90.7895
gduggal-bwaplatSNPtvmap_l100_m1_e0homalt
73.0094
57.4920
100.0000
72.7511
51993844519800
bgallagher-sentieonSNP*map_l250_m2_e1het
98.0666
98.7652
97.3778
90.6744
519965519914025
17.8571
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.7019
75.5446
96.3855
35.1952
520216845200195193
98.9744
qzeng-customSNPtvsegduphet
97.9263
98.4679
97.3907
94.6360
52068151881396
4.3166
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6474
95.7705
99.5993
26.2869
520823052202121
100.0000
ckim-vqsrSNPtvsegduphet
98.9929
98.5625
99.4272
95.9257
5211765207300
0.0000
ckim-isaacSNP*map_l150_m1_e0homalt
63.2096
46.2255
99.9233
66.9874
52116062521144
100.0000
ckim-isaacSNPtifunc_cdshomalt
99.4184
98.8436
100.0000
17.1197
521461521400
jpowers-varprowlSNPtvsegduphet
96.8798
98.6193
95.2007
93.8679
52147352172634
1.5209
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
83.7908
73.3408
97.7136
42.2636
521618965214122120
98.3607
gduggal-snapplatINDELI1_5HG002compoundhet*
48.1810
42.2143
56.1120
77.8637
5216714054124233851
20.1039
anovak-vgSNPtifunc_cdshomalt
99.1630
98.9384
99.3887
18.9378
52195652033230
93.7500
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9550
96.0096
99.9809
26.3336
5221217523310
0.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
96.0463
0.0000
0.0000
5223215000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9841
96.0831
99.9618
27.3710
5225213523621
50.0000
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8202
96.1199
99.5818
26.2339
522721152392222
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.8298
96.1383
99.5819
26.2302
522821052402222
100.0000
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
52.3943
37.9325
84.6777
63.9143
522985565018908475
52.3128
eyeh-varpipeSNP*map_l250_m2_e1het
98.4883
99.3731
97.6190
91.2048
52313350841248
6.4516
gduggal-bwavardSNPtifunc_cdshomalt
99.6099
99.2227
100.0000
20.4486
523441521300
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
74.5911
64.9460
87.6005
39.3454
52342825763108107
99.0741
gduggal-snapvardSNPtifunc_cdshomalt
99.6385
99.2986
99.9808
20.4816
523837521711
100.0000
gduggal-bwaplatSNPtifunc_cdshomalt
99.6481
99.2986
100.0000
20.6003
523837523800
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9353
96.3590
99.5640
26.8986
524019852522322
95.6522
eyeh-varpipeINDELI6_15*homalt
77.6886
84.0359
72.2329
34.4939
5243996527320272012
99.2600
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.9829
96.4509
99.5644
27.1624
524519352572322
95.6522