PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75501-75550 / 86044 show all
hfeng-pmm3SNP*map_l250_m2_e0het
98.7752
98.5945
98.9565
89.0448
5121735121543
5.5556
ckim-gatkSNPtvmap_l150_m1_e0het
83.3287
73.7979
95.6863
90.3850
5126182051242318
3.4632
gduggal-snapvardSNPtvsegduphet
97.6892
96.9926
98.3958
95.3896
512815950918312
14.4578
qzeng-customSNP*map_l250_m2_e1*
75.9076
64.2294
92.7764
95.4610
513028575086396330
83.3333
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.9845
94.5971
99.4954
76.1070
513029351272610
38.4615
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.9845
94.5971
99.4954
76.1070
513029351272610
38.4615
anovak-vgSNPtvsegduphet
97.1722
97.0305
97.3143
94.5962
5130157510914142
29.7872
bgallagher-sentieonSNP*map_l250_m2_e0het
98.0598
98.7678
97.3619
90.6085
513064513013925
17.9856
asubramanian-gatkINDELD6_15HG002complexvar*
97.5846
96.7748
98.4081
58.8477
513117151318377
92.7711
jlack-gatkINDELD6_15HG002complexvar*
97.2520
96.7937
97.7147
58.0825
5132170513112096
80.0000
gduggal-bwafbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
93.1275
89.5499
97.0028
61.5094
5133599346310792
85.9813
gduggal-bwavardSNPtvsegduphet
97.8517
97.1439
98.5698
95.5379
513615151007415
20.2703
qzeng-customSNP*map_l150_m0_e0het
75.9917
64.6851
92.0882
93.9068
513628045098438367
83.7900
cchapple-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9217
96.6692
99.2071
63.7791
513717753804337
86.0465
ckim-dragenINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9137
96.7068
99.1511
64.1489
513917551394440
90.9091
ltrigg-rtg2INDELD6_15HG002complexvar*
97.7900
96.9257
98.6698
51.5393
513916349706750
74.6269
raldana-dualsentieonSNP*map_l250_m2_e1het
97.5147
97.6444
97.3854
89.4825
514012451401383
2.1739
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapplatSNPtvmap_l125_m1_e0homalt
93.4557
87.7304
99.9806
69.1888
5141719514210
0.0000
jmaeng-gatkSNPtvmap_l150_m1_e0het
83.3948
74.0426
95.4512
90.5818
5143180351412456
2.4490
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.3594
91.9064
88.8636
53.3705
51444534684587468
79.7274
ciseli-customSNPtvsegduphet
93.4710
97.3331
89.9038
92.8401
5146141513857716
2.7730
gduggal-bwavardSNP*map_l250_m2_e1het
87.2283
97.7964
78.7214
93.0803
51481165098137835
2.5399
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_triTR_11to50*
77.5159
76.4592
78.6021
48.9675
51481585512813961280
91.6905
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2600
94.9290
95.5934
73.1707
51482755163238158
66.3866
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2600
94.9290
95.5934
73.1707
51482755163238158
66.3866
astatham-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1342
96.9891
99.3066
64.2892
515416051563630
83.3333
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.9120
63.9658
99.6350
31.9608
5155290451861918
94.7368
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.9120
63.9658
99.6350
31.9608
5155290451861918
94.7368
ghariani-varprowlSNP*map_l250_m2_e1het
94.4053
97.9293
91.1260
92.3124
5155109515550285
16.9323
astatham-gatkSNPtvsegduphet
98.6416
97.5222
99.7869
92.4167
51561315152110
0.0000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
93.0148
88.2142
98.3681
47.4010
515768911935198162
81.8182
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
93.0148
88.2142
98.3681
47.4010
515768911935198162
81.8182
ciseli-customSNPtvmap_l125_m2_e1homalt
87.1141
84.9193
89.4252
70.0769
51589165150609473
77.6683
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50*
76.5465
76.6078
76.4854
46.7535
51581575516215871041
65.5955
jlack-gatkSNP*map_l250_m2_e1het
91.1258
98.0243
85.1345
94.1114
5160104516090160
6.6593
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.3348
92.1922
81.1772
59.7644
5160437515811961175
98.2441
eyeh-varpipeSNP*map_l250_m2_e0het
98.5164
99.3647
97.6826
91.1394
51613350161198
6.7227
rpoplin-dv42SNP*map_l250_m2_e1het
98.1365
98.0433
98.2299
88.1941
516110351619357
61.2903
jmaeng-gatkINDELD6_15HG002complexvar*
97.9225
97.3595
98.4921
58.5358
516214051607974
93.6709
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.2214
97.1584
99.3078
64.5805
516315151653629
80.5556
jli-customINDELD6_15HG002complexvar*
98.1282
97.3972
98.8702
56.5015
516413851635953
89.8305
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
60.1668
61.4104
58.9725
57.4072
51643245728950714386
86.4918
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.1701
95.0166
99.4235
24.0070
516727151743029
96.6667
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.7145
87.1038
96.8405
38.5031
51677655180169126
74.5562
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4004
63.2326
99.7503
28.0442
5168300551931313
100.0000
qzeng-customSNPtimap_l150_m2_e1homalt
80.1365
67.1910
99.2610
72.9055
5169252451043838
100.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.4676
77.4068
58.2374
31.9666
51701509769255164283
77.6468
ckim-vqsrINDELD6_15HG002complexvar*
98.0282
97.5292
98.5322
58.5722
517113151697770
90.9091