PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75351-75400 / 86044 show all
jli-customSNPtimap_l150_m0_e0het
98.3675
97.5280
99.2216
76.7991
497112649713915
38.4615
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.2450
85.0667
91.6700
56.4134
49738734523411383
93.1873
cchapple-customSNP*map_l250_m2_e0het
95.2059
95.7451
94.6728
91.6166
4973221497628064
22.8571
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_11to50*
73.1367
73.8749
72.4131
44.0488
49741759714527222236
82.1455
egarrison-hhgaSNPtimap_l250_m2_e1*
98.8083
98.0102
99.6195
88.7052
49751014975199
47.3684
jlack-gatkSNPtimap_l250_m2_e1*
94.3407
98.0299
90.9191
92.8360
4976100497649746
9.2555
ndellapenna-hhgaSNP*map_l250_m2_e0het
97.5992
95.8799
99.3814
87.8462
498021449803114
45.1613
eyeh-varpipeSNPtimap_l250_m2_e0*
99.0376
99.4409
98.6375
90.5192
4980284923686
8.8235
asubramanian-gatkSNPtvmap_l125_m2_e0*
46.3923
30.2201
99.7997
92.3039
4983115064982102
20.0000
rpoplin-dv42SNPtimap_l250_m2_e1*
98.5375
98.2270
98.8501
88.3448
49869049865838
65.5172
gduggal-bwaplatSNP*map_l150_m2_e0homalt
59.7639
42.6276
99.9398
85.5833
49876712498333
100.0000
gduggal-bwafbSNPtimap_l150_m0_e0het
98.0450
97.9007
98.1897
82.8404
499010749909234
36.9565
egarrison-hhgaSNPtimap_l150_m0_e0het
98.7730
97.9203
99.6406
81.1953
49911064991186
33.3333
ckim-isaacINDELI6_15*homalt
87.6777
79.9968
96.9903
41.8473
499112484995155121
78.0645
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
raldana-dualsentieonSNPtimap_l250_m2_e1*
98.2211
98.4437
97.9996
88.4416
49977949971023
2.9412
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.4951
97.6558
99.3490
71.4213
49991205036337
21.2121
ghariani-varprowlSNPtimap_l150_m0_e0het
96.0700
98.0773
94.1431
85.9691
499998499931179
25.4019
dgrover-gatkSNPtimap_l250_m2_e1*
98.6193
98.5028
98.7362
90.4249
50007650006418
28.1250
ckim-dragenSNPtimap_l150_m0_e0het
96.9562
98.1165
95.8230
83.8541
500196500121818
8.2569
raldana-dualsentieonSNPtimap_l150_m0_e0het
97.9052
98.1362
97.6753
80.7049
50029550001191
0.8403
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
94.3510
97.7144
91.2114
71.0965
5002117537651861
11.7761
gduggal-snapvardSNP*map_l250_m2_e0het
81.9515
96.3612
71.2908
92.3358
50051894954199592
4.6115
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.2141
84.4066
94.6024
34.3983
500792511480655637
97.2519
rpoplin-dv42SNPtimap_l150_m0_e0het
98.4858
98.2735
98.6990
79.8611
50098850076644
66.6667
raldana-dualsentieonINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.6617
94.2604
99.1884
62.0692
500930550114134
82.9268
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
60.5876
52.6310
71.3784
62.8612
50114510650426081963
75.2684
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
80.3663
84.4740
76.6396
52.9071
501192136811122231
20.5882
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7294
97.9480
99.5234
39.3399
501210550122423
95.8333
ckim-isaacSNPtimap_l125_m0_e0het
75.4138
60.6559
99.6620
78.2483
501232515012172
11.7647
ckim-vqsrSNP*map_l125_m1_e0homalt
45.7370
29.6539
99.9402
85.9137
501311892501332
66.6667
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.7626
87.4564
96.5147
48.4959
5013719504018291
50.0000
jli-customSNP*map_l250_m2_e0het
97.7202
96.5537
98.9152
87.0848
501517950155524
43.6364
jlack-gatkSNPtimap_l150_m0_e0het
92.9137
98.4304
87.9825
88.8885
501780501568560
8.7591
hfeng-pmm2INDELD6_15HG002complexvar*
96.9573
94.6624
99.3663
56.8597
501928350183226
81.2500
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.4548
98.0660
98.8468
71.0240
50209950575913
22.0339
raldana-dualsentieonINDELD6_15HG002complexvar*
96.9018
94.6813
99.2289
57.2443
502028250193937
94.8718
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.0140
98.1239
99.9205
31.1473
502196502544
100.0000
hfeng-pmm1SNPtimap_l250_m2_e1*
99.0337
98.9362
99.1315
88.6771
50225450224410
22.7273
hfeng-pmm3INDELD6_15HG002complexvar*
97.0065
94.7378
99.3864
56.7243
502327950213124
77.4194
bgallagher-sentieonSNPtimap_l250_m2_e1*
98.6646
98.9756
98.3555
89.6132
50245250248419
22.6190
hfeng-pmm1SNPtimap_l150_m0_e0het
98.8393
98.5874
99.0925
80.9472
5025725023468
17.3913
qzeng-customINDELD6_15HG002complexvar*
93.7910
94.8133
92.7906
55.1605
50272755277410156
38.0488
gduggal-snapfbINDELI6_15HG002compoundhet*
66.9443
57.2812
80.5291
25.2164
50273749584414131393
98.5846
hfeng-pmm1INDELD6_15HG002complexvar*
97.1047
94.8887
99.4267
56.6618
503127150292925
86.2069
hfeng-pmm3SNPtimap_l250_m2_e1*
99.1724
99.1529
99.1920
88.8826
5033435033415
12.1951
hfeng-pmm2SNPtimap_l250_m2_e1*
98.8122
99.1529
98.4739
90.0047
5033435033789
11.5385
mlin-fermikitSNPtimap_l150_m2_e0het
55.8942
39.0731
98.1471
68.9855
503378485032955
5.2632