PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75301-75350 / 86044 show all
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
58.8795
58.5755
59.1866
73.4509
49183478691347671577
33.0816
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
57.3405
87.8864
42.5514
59.2810
4919678495066836644
99.4164
rpoplin-dv42SNPtimap_l250_m2_e0*
98.5577
98.2428
98.8746
88.2672
49208849205637
66.0714
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
60.7906
0.0000
0.0000
49213174000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7012
90.7431
99.0204
73.2912
492150248524828
58.3333
eyeh-varpipeINDELI1_5*hetalt
60.5783
43.9661
97.3679
73.2444
492262735216141132
93.6170
ndellapenna-hhgaSNPtimap_l250_m2_e1*
98.3031
97.0055
99.6358
87.9552
49241524924189
50.0000
jmaeng-gatkSNP*map_l150_m0_e0het
75.3760
62.0529
95.9844
93.8640
49273013492420621
10.1942
gduggal-snapfbINDELI6_15HG002compoundhethetalt
70.7588
57.7252
91.3944
38.7805
492836091147108105
97.2222
raldana-dualsentieonSNPtimap_l250_m2_e0*
98.2170
98.4425
97.9924
88.3517
49307849301013
2.9703
ndellapenna-hhgaSNPtimap_l150_m0_e0het
98.1786
96.7628
99.6364
79.7339
49321654932187
38.8889
gduggal-snapfbINDELI6_15*hetalt
66.8619
57.6892
79.5031
50.4107
493336181152297287
96.6330
ckim-gatkSNP*map_l150_m0_e0het
75.5141
62.1285
96.2515
93.6797
49333007493019225
13.0208
dgrover-gatkSNPtimap_l250_m2_e0*
98.6206
98.5024
98.7390
90.3671
49337549336318
28.5714
ckim-isaacSNPtvmap_l100_m2_e1homalt
69.3075
53.0424
99.9595
61.1858
49344368493422
100.0000
eyeh-varpipeINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.2411
88.1901
92.3898
58.0809
49366614589378364
96.2963
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.0535
96.5032
97.6101
85.2011
4940179494212184
69.4215
ghariani-varprowlSNPtimap_l250_m2_e1*
96.1939
97.3404
95.0741
91.3522
4941135494125654
21.0938
ltrigg-rtg1SNP*map_l250_m2_e1het
96.6928
93.8640
99.6973
80.4597
49413234941154
26.6667
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2859
91.1304
99.8384
63.0944
4942481494485
62.5000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.9346
96.5800
87.7156
44.0577
49421754934691677
97.9740
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
52.8397
49.0718
57.2344
61.3327
49435130571642713848
90.0960
gduggal-bwavardSNPtimap_l250_m2_e1*
91.4742
97.4586
86.1821
92.2577
4947129492178928
3.5488
mlin-fermikitSNPtvmap_l150_m2_e0*
57.2030
43.5755
83.2323
66.6536
494864074944996869
87.2490
jli-customSNPtimap_l250_m2_e1*
98.3796
97.4783
99.2976
86.9545
494812849483518
51.4286
jpowers-varprowlSNP*map_l250_m2_e1het
93.5587
94.0919
93.0316
92.3350
4953311495337190
24.2588
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.6118
96.7950
81.7043
50.5663
4953164495711101047
94.3243
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.9877
74.1728
96.7962
69.7744
49541725495516454
32.9268
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.1226
86.4620
96.3144
38.7578
495677618319701658
93.8659
hfeng-pmm1SNPtimap_l250_m2_e0*
99.0408
98.9617
99.1200
88.5996
49565249564410
22.7273
bgallagher-sentieonSNPtimap_l250_m2_e0*
98.6664
98.9816
98.3532
89.5470
49575149578319
22.8916
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
89.6510
84.0909
95.9984
54.3693
495893823519896
97.9592
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.6510
84.0909
95.9984
54.3693
495893823519896
97.9592
gduggal-bwafbSNPtimap_l250_m2_e1*
98.0431
97.7147
98.3737
89.9899
496011649608225
30.4878
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.4306
91.4992
99.7150
67.7457
49624614898145
35.7143
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.4306
91.4992
99.7150
67.7457
49624614898145
35.7143
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50*
74.6805
73.6967
75.6909
58.8837
49621771495715921522
95.6030
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
60.7121
0.0000
0.0000
49623211000
mlin-fermikitINDELI16_PLUS**
82.9403
77.8109
88.7937
66.6528
496214154976628607
96.6561
gduggal-bwavardSNPtimap_l150_m0_e0het
90.2624
97.3906
84.1064
88.1487
4964133493293244
4.7210
ckim-dragenSNPtimap_l250_m2_e1*
97.3249
97.8132
96.8415
89.7690
4965111496716220
12.3457
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
42.4269
27.3328
94.7531
66.0231
4965132005219289255
88.2353
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
42.4269
27.3328
94.7531
66.0231
4965132005219289255
88.2353
hfeng-pmm2SNPtimap_l250_m2_e0*
98.8259
99.1613
98.4927
89.9448
4966424966769
11.8421
hfeng-pmm3SNPtimap_l250_m2_e0*
99.1712
99.1613
99.1811
88.8122
4966424966415
12.1951
ciseli-customSNPtvmap_l125_m1_e0homalt
87.0129
84.8123
89.3307
67.3979
49708904965593461
77.7403
gduggal-snapfbSNP*map_l250_m2_e0het
94.2359
95.6873
92.8278
87.5230
49702244970384172
44.7917
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
51.3798
36.1160
88.9898
58.0399
497187934995618540
87.3786