PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75201-75250 / 86044 show all
asubramanian-gatkSNPtimap_l150_m1_e0*
39.2304
24.4115
99.8340
94.1489
481214900481084
50.0000
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_11to50*
72.6300
71.4689
73.8294
38.5577
48121921591320961645
78.4828
jpowers-varprowlSNPtimap_l150_m0_e0het
94.9778
94.4281
95.5339
85.9705
4813284481322582
36.4444
mlin-fermikitINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.6836
70.6547
99.6488
33.9430
4813199948231717
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.5658
99.5452
99.5863
69.3755
48152248152010
50.0000
qzeng-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.5273
99.1969
97.8668
72.2743
481739486310620
18.8679
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7826
99.6279
99.9378
69.6768
481918481933
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7111
99.6899
99.7323
69.3066
48221548431310
76.9231
mlin-fermikitSNPtimap_l125_m0_e0*
52.3097
37.7919
84.9392
57.8951
482379394822855764
89.3567
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7828
99.7106
99.8551
69.0939
482314482374
57.1429
jpowers-varprowlSNPtimap_l250_m2_e1*
95.5153
95.0355
96.0000
91.5044
4824252482420159
29.3532
ltrigg-rtg2SNPtimap_l250_m2_e1*
97.3857
95.0355
99.8552
81.2214
4824252482774
57.1429
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7622
99.7519
99.7725
68.8442
4825124825117
63.6364
cchapple-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4664
99.3822
99.5507
61.1367
48263048742210
45.4545
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8448
99.7726
99.9172
69.6417
482611482643
75.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8552
99.7933
99.9172
69.3872
482710482743
75.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.7933
99.8965
69.7243
482710482753
60.0000
gduggal-bwaplatSNP*map_l150_m0_e0*
57.1530
40.1263
99.2803
94.5754
4828720448283515
42.8571
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8449
99.8139
99.8759
69.1925
48289482865
83.3333
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4416
94.4303
96.4748
33.6724
48322854844177175
98.8701
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.8289
96.6593
96.9990
75.1800
48321674816149119
79.8658
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.8289
96.6593
96.9990
75.1800
48321674816149119
79.8658
jlack-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.4853
99.5058
99.4648
66.6987
48322448322614
53.8462
gduggal-snapvardSNPtimap_l250_m2_e1*
86.9758
95.2325
80.0366
91.7380
48342424807119973
6.0884
gduggal-snapfbSNPtimap_l150_m0_e0het
94.2863
94.8597
93.7197
77.7514
48352624835324174
53.7037
qzeng-customSNPtimap_l150_m1_e0homalt
79.2986
65.9888
99.3340
70.0903
4835249247733232
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5168
96.7193
98.3276
70.0415
483516448218263
76.8293
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5168
96.7193
98.3276
70.0415
483516448218263
76.8293
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.3866
96.7594
96.0167
76.6953
48371624821200138
69.0000
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.3866
96.7594
96.0167
76.6953
48371624821200138
69.0000
qzeng-customINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
89.6938
81.4584
99.7817
61.4370
48371101274265
83.3333
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6806
99.6087
99.7525
66.7490
48371948371210
83.3333
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6909
99.6293
99.7526
66.4708
4838184838128
66.6667
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6909
99.6293
99.7526
66.9619
4838184838129
75.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7116
99.6705
99.7527
66.8941
4840164840129
75.0000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
78.0254
68.0540
91.4205
35.5394
484022726506160
98.3607
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6705
99.6705
99.6705
66.2895
48401648401613
81.2500
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7013
99.6705
99.7321
66.3966
48401648401310
76.9231
ckim-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7116
99.6705
99.7527
66.7352
48401648401210
83.3333
ckim-dragenSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.7426
99.6705
99.8147
66.5588
484016484998
88.8889
ckim-gatkSNPtimap_l100_m0_e0homalt
76.7317
62.2717
99.9381
70.4634
48412933484132
66.6667
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
36.2353
32.7562
40.5412
52.4633
48439942483970977056
99.4223
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
74.1810
59.3050
99.0185
33.0396
4847332644394437
84.0909
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
79.8568
84.6127
75.6070
64.0420
485088233941095247
22.5571
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.9180
97.0394
96.7968
74.8717
48511484835160117
73.1250
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.9180
97.0394
96.7968
74.8717
48511484835160117
73.1250
gduggal-snapvardSNPtimap_l150_m0_e0het
85.6207
95.1933
77.7975
87.4036
48522454818137594
6.8364
ltrigg-rtg1SNPtimap_l150_m0_e0het
97.4302
95.2129
99.7533
66.6849
48532444853123
25.0000
ltrigg-rtg2SNP*map_l250_m2_e1het
95.8720
92.2112
99.8355
76.2366
4854410485481
12.5000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4166
67.7028
90.3846
37.1872
485723176587069
98.5714