PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
75101-75150 / 86044 show all
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3539
94.1988
96.5376
67.5442
47092904963178155
87.0787
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3539
94.1988
96.5376
67.5442
47092904963178155
87.0787
jpowers-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50*
94.1706
97.3744
91.1708
74.9459
47101274750460136
29.5652
jmaeng-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2415
98.8665
99.6193
67.1895
4710544710185
27.7778
jlack-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0016
98.8665
99.1370
66.6503
4710544710419
21.9512
ghariani-varprowlSNPtilowcmp_SimpleRepeat_diTR_11to50*
89.5968
97.3744
82.9698
74.5108
47101274755976140
14.3443
gduggal-snapfbSNPtimap_l250_m2_e0*
94.5805
94.0895
95.0767
89.6969
47122964712244127
52.0492
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1690
98.9505
99.3886
67.1606
47145047142910
34.4828
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1597
98.9715
99.3486
67.2313
4715494728314
12.9032
ciseli-customSNPtvmap_l150_m2_e0het
71.3414
65.0579
78.9685
85.0033
471825344716125650
3.9809
dgrover-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2427
99.0344
99.4519
67.0189
4718464718269
34.6154
qzeng-customSNPtvmap_l125_m0_e0*
81.4498
71.1657
95.2082
88.9716
471919124709237201
84.8101
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.6201
99.3057
99.9365
31.9250
472033471833
100.0000
bgallagher-sentieonSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2848
99.0764
99.4941
66.4545
4720444720245
20.8333
qzeng-customSNPtimap_l150_m0_e0*
73.3597
60.0560
94.2346
92.3897
472131404691287246
85.7143
egarrison-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50*
98.3647
97.6018
99.1396
66.6853
472111647244116
39.0244
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5824
99.3478
97.8288
50.3389
472231473110595
90.4762
eyeh-varpipeSNP*map_l250_m1_e0het
98.4331
99.3060
97.5755
90.8816
47223345881148
7.0175
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.5395
97.2611
99.8520
63.6434
4723133472375
71.4286
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.2750
99.3899
99.1604
41.1634
47242947244040
100.0000
gduggal-bwafbSNPtilowcmp_SimpleRepeat_diTR_11to50*
96.0758
97.7052
94.4998
74.6425
4726111474227680
28.9855
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
57.2983
42.6638
87.2144
64.2116
472863544543666344
51.6517
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_diTR_11to50het
84.9692
75.8339
96.6071
82.4013
47291507475516752
31.1377
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_11to50*
95.6571
97.7672
93.6362
64.2950
4729108437029764
21.5488
anovak-vgSNPtvmap_l125_m1_e0homalt
88.9946
80.7338
99.1387
66.3699
4731112947194130
73.1707
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.6241
97.4259
99.8523
63.8155
4731125473176
85.7143
mlin-fermikitINDELI6_15HG002compoundhethetalt
71.1432
55.4293
99.2920
28.6902
4732380547683434
100.0000
jli-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2976
99.4123
99.1832
67.8581
4736284736398
20.5128
egarrison-hhgaINDELD6_15HG002compoundhet*
61.1341
52.4527
73.2591
39.3063
47374294487117781713
96.3442
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5273
99.6634
99.3915
39.2247
47371647372928
96.5517
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.6772
97.5494
99.8314
64.0612
4737119473785
62.5000
rpoplin-dv42SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5167
99.4332
99.6003
68.5145
4737274735197
36.8421
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5224
99.6844
91.6941
50.1544
4738154736429428
99.7669
raldana-dualsentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50*
98.6778
97.5906
99.7894
64.3361
47391174739108
80.0000
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5170
99.7054
99.3293
39.8437
47391447393232
100.0000
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50*
92.2109
97.6112
87.3769
74.0644
47401164790692106
15.3179
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
76.3850
99.7475
61.8895
40.6948
474112482829732967
99.7982
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.0972
99.7896
96.4613
40.7376
4743104743174174
100.0000
mlin-fermikitINDELD6_15HG002complexvar*
90.8139
89.4568
92.2128
58.0463
47435594784404381
94.3069
mlin-fermikitINDELI6_15*hetalt
71.1528
55.4789
99.1705
39.8078
4744380747824040
100.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.9356
99.8106
96.1297
54.5329
474494744191190
99.4764
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8715
99.8106
97.9499
33.5489
4744947309997
97.9798
mlin-fermikitSNPtvmap_l125_m2_e1het
61.6520
44.9730
97.9955
67.0300
474658074742971
1.0309
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9267
99.8738
97.9975
50.0103
4747647479796
98.9691
jli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4971
99.8738
99.1234
45.0258
4747647494240
95.2381
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8446
99.8948
97.8162
47.4789
474854748106105
99.0566
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0301
99.8948
98.1803
50.4508
4748547488887
98.8636
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0508
99.8948
98.2209
50.1958
4748547488685
98.8372
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5576
99.9158
97.2359
49.7376
474944749135134
99.2593
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0407
99.9158
98.1807
50.4457
4749447498887
98.8636