PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74851-74900 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.4159 | 66.8404 | 97.8199 | 66.1276 | 4489 | 2227 | 4487 | 100 | 23 | 23.0000 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | * | 98.4440 | 98.1000 | 98.7904 | 87.6879 | 4492 | 87 | 4492 | 55 | 36 | 65.4545 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6252 | 94.1534 | 99.2303 | 30.5059 | 4493 | 279 | 4512 | 35 | 32 | 91.4286 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.7117 | 92.9088 | 77.8438 | 78.8648 | 4494 | 343 | 4455 | 1268 | 79 | 6.2303 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9791 | 94.1744 | 99.9560 | 31.2217 | 4494 | 278 | 4547 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | het | 90.2196 | 88.2872 | 92.2384 | 90.0002 | 4500 | 597 | 4504 | 379 | 218 | 57.5198 | |
| gduggal-snapfb | INDEL | I6_15 | * | homalt | 78.8948 | 72.1430 | 87.0410 | 39.6459 | 4501 | 1738 | 4480 | 667 | 645 | 96.7016 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | * | 98.0939 | 98.3402 | 97.8488 | 87.6784 | 4503 | 76 | 4503 | 99 | 3 | 3.0303 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.2615 | 74.0424 | 87.6212 | 52.2423 | 4504 | 1579 | 4339 | 613 | 548 | 89.3964 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7679 | 94.4049 | 99.2523 | 24.5186 | 4505 | 267 | 4513 | 34 | 33 | 97.0588 | |
| dgrover-gatk | SNP | ti | map_l250_m1_e0 | * | 98.5022 | 98.3839 | 98.6208 | 89.9439 | 4505 | 74 | 4505 | 63 | 18 | 28.5714 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | het | 98.0320 | 96.4691 | 99.6463 | 55.8548 | 4508 | 165 | 4508 | 16 | 9 | 56.2500 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0250 | 97.6820 | 98.3704 | 46.6267 | 4509 | 107 | 4467 | 74 | 19 | 25.6757 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.8999 | 88.1227 | 96.0154 | 66.8254 | 4511 | 608 | 4482 | 186 | 78 | 41.9355 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | het | 69.0686 | 96.5761 | 53.7572 | 56.2100 | 4513 | 160 | 4600 | 3957 | 124 | 3.1337 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.2341 | 94.6563 | 99.9563 | 27.5665 | 4517 | 255 | 4570 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8401 | 94.6563 | 99.1270 | 30.3647 | 4517 | 255 | 4542 | 40 | 38 | 95.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9114 | 94.6773 | 99.2536 | 28.7725 | 4518 | 254 | 4521 | 34 | 34 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 58.8351 | 54.0163 | 64.5980 | 47.2721 | 4519 | 3847 | 5600 | 3069 | 2397 | 78.1036 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5522 | 94.7192 | 98.4575 | 25.9492 | 4520 | 252 | 4532 | 71 | 69 | 97.1831 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 66.2224 | 0.0000 | 0.0000 | 4521 | 2306 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0497 | 94.7611 | 99.4516 | 24.8186 | 4522 | 250 | 4534 | 25 | 25 | 100.0000 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | * | 74.6091 | 62.6419 | 92.2286 | 95.4856 | 4524 | 2698 | 4486 | 378 | 314 | 83.0688 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | * | 98.9508 | 98.8644 | 99.0374 | 88.1947 | 4527 | 52 | 4527 | 44 | 10 | 22.7273 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | * | 98.5526 | 98.8862 | 98.2213 | 89.0457 | 4528 | 51 | 4528 | 82 | 19 | 23.1707 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | het | 98.2001 | 96.8971 | 99.5386 | 52.4849 | 4528 | 145 | 4530 | 21 | 10 | 47.6190 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | het | 72.5569 | 57.0403 | 99.6699 | 83.7697 | 4529 | 3411 | 4529 | 15 | 2 | 13.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.6781 | 95.0672 | 73.1457 | 83.0764 | 4529 | 235 | 4497 | 1651 | 43 | 2.6045 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5695 | 96.6091 | 72.0927 | 44.6474 | 4530 | 159 | 4544 | 1759 | 24 | 1.3644 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3984 | 94.9288 | 100.0000 | 24.8387 | 4530 | 242 | 4542 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 77.7879 | 63.7655 | 99.7160 | 28.7405 | 4535 | 2577 | 4564 | 13 | 13 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.0419 | 95.4134 | 96.6787 | 32.0948 | 4535 | 218 | 4541 | 156 | 154 | 98.7179 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.3132 | 95.4134 | 95.2131 | 38.5261 | 4535 | 218 | 4535 | 228 | 107 | 46.9298 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0247 | 96.7157 | 95.3435 | 43.9443 | 4535 | 154 | 4607 | 225 | 89 | 39.5556 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1938 | 95.0545 | 99.4316 | 25.2614 | 4536 | 236 | 4548 | 26 | 26 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | het | 94.0213 | 95.4154 | 92.6675 | 86.7306 | 4537 | 218 | 4537 | 359 | 166 | 46.2396 | |
| hfeng-pmm2 | SNP | ti | map_l250_m1_e0 | * | 98.7163 | 99.0828 | 98.3525 | 89.4985 | 4537 | 42 | 4537 | 76 | 9 | 11.8421 | |
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | * | 99.0936 | 99.0828 | 99.1044 | 88.3618 | 4537 | 42 | 4537 | 41 | 5 | 12.1951 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2146 | 96.7797 | 99.6928 | 37.8817 | 4538 | 151 | 4543 | 14 | 2 | 14.2857 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.2831 | 67.3994 | 99.2563 | 60.8562 | 4538 | 2195 | 4538 | 34 | 12 | 35.2941 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.7188 | 97.6759 | 99.7842 | 42.6822 | 4539 | 108 | 4623 | 10 | 10 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7720 | 98.3536 | 99.1941 | 45.0969 | 4540 | 76 | 4554 | 37 | 1 | 2.7027 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.7416 | 95.5607 | 95.9231 | 39.1360 | 4542 | 211 | 4541 | 193 | 74 | 38.3420 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | het | 95.0712 | 95.5205 | 94.6261 | 91.1826 | 4542 | 213 | 4543 | 258 | 61 | 23.6434 | |
| egarrison-hhga | INDEL | I6_15 | HG002complexvar | * | 96.2019 | 94.8456 | 97.5976 | 55.0867 | 4545 | 247 | 4550 | 112 | 73 | 65.1786 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.3148 | 95.2850 | 99.4329 | 24.6012 | 4547 | 225 | 4559 | 26 | 26 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | * | homalt | 75.9353 | 71.8780 | 80.4782 | 54.2097 | 4547 | 1779 | 4679 | 1135 | 811 | 71.4537 | |
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | het | 97.4601 | 95.6257 | 99.3663 | 87.5048 | 4547 | 208 | 4547 | 29 | 14 | 48.2759 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2363 | 98.5269 | 99.9560 | 35.0014 | 4548 | 68 | 4544 | 2 | 1 | 50.0000 | |