PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
74651-74700 / 86044 show all
ckim-dragenSNPtvmap_l125_m0_e0het
97.2122
98.2504
96.1958
81.1222
432477432417110
5.8480
gduggal-bwaplatSNPtvfunc_cds*
99.4027
98.9934
99.8155
42.5143
432744432780
0.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8606
97.3459
98.3807
45.3197
432811812333203185
91.1330
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
87.6933
79.6065
97.6088
41.6096
432911094327106105
99.0566
raldana-dualsentieonSNPtvmap_l125_m0_e0het
98.3750
98.3640
98.3860
76.8948
4329724328711
1.4085
gduggal-snapplatINDELD1_5*hetalt
56.5026
42.2548
85.2469
84.6995
432959164403762572
75.0656
gduggal-snapplatSNPtvfunc_cds*
99.2890
99.0391
99.5401
39.3276
4329424329200
0.0000
mlin-fermikitSNPtvfunc_cds*
99.2667
99.1078
99.4262
22.7208
43323943322514
56.0000
eyeh-varpipeINDEL*map_sirenhet
96.4251
96.0958
96.7566
78.9179
43321764803161108
67.0807
ltrigg-rtg1INDEL*map_sirenhet
97.4658
96.1180
98.8519
76.2761
43331754305503
6.0000
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
88.6934
79.9189
99.6323
81.5479
4334108943351615
93.7500
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
88.6934
79.9189
99.6323
81.5479
4334108943351615
93.7500
anovak-vgINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
28.1118
0.0000
0.0000
433411083000
ltrigg-rtg2SNPtimap_l250_m1_e0*
97.1749
94.6495
99.8389
79.6190
4334245433774
57.1429
jlack-gatkSNPtvmap_l125_m0_e0het
90.4803
98.5003
83.6680
86.8150
433566433484647
5.5556
jpowers-varprowlSNPtimap_l250_m1_e0*
95.2339
94.6932
95.7809
91.0914
4336243433619157
29.8429
jpowers-varprowlSNPtvfunc_cds*
98.8262
99.1993
98.4559
36.2571
4336354336685
7.3529
rpoplin-dv42SNPtvmap_l125_m0_e0het
98.3333
98.5458
98.1217
74.3380
43376443368343
51.8072
hfeng-pmm1SNPtvmap_l125_m0_e0het
98.9058
98.5912
99.2223
76.3803
4339624338349
26.4706
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.9840
84.8017
85.1670
81.2419
43417784335755704
93.2450
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
67.2347
77.6447
59.2860
62.9451
43451251468332161125
34.9813
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50*
93.1299
89.8491
96.6594
59.1348
4346491445615472
46.7532
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.6759
93.5657
100.0000
27.8543
4348299439800
hfeng-pmm2SNPtvmap_l125_m0_e0het
98.4153
98.7957
98.0379
79.2988
4348534347879
10.3448
ciseli-customSNPtvfunc_cds*
95.2555
99.4738
91.3804
30.2616
434823433640911
2.6895
asubramanian-gatkSNPtvfunc_cds*
99.5422
99.4967
99.5877
36.6971
4349224348180
0.0000
gduggal-snapvardSNPtimap_l250_m1_e0*
86.1545
95.0207
78.8017
91.2590
43512284327116468
5.8419
ghariani-varprowlSNPtvmap_l125_m0_e0het
95.4481
98.8639
92.2604
83.4014
435150435136564
17.5342
gduggal-bwavardSNPtimap_l125_m0_e0homalt
98.3384
96.9272
99.7913
70.3716
4353138430497
77.7778
dgrover-gatkSNPtvmap_l125_m0_e0het
98.4509
98.9321
97.9743
81.0960
43544743539015
16.6667
hfeng-pmm3SNPtvmap_l125_m0_e0het
99.0220
98.9321
99.1120
76.4302
4354474353393
7.6923
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
64.4294
85.0889
51.8421
37.0340
4354763433440263730
92.6478
ltrigg-rtg2SNP*map_l250_m1_e0het
95.5463
91.5878
99.8624
74.1983
4355400435561
16.6667
ckim-vqsrINDEL*map_sirenhet
97.3739
96.6060
98.1540
87.1388
435515343608211
13.4146
ckim-vqsrSNPtvfunc_cds*
99.7367
99.6568
99.8166
38.6616
435615435580
0.0000
ghariani-varprowlSNPtvfunc_cds*
99.2142
99.6568
98.7755
38.2266
4356154356545
9.2593
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.6364
59.0060
60.2804
68.5856
43573027614840511556
38.4103
qzeng-customSNPtvfunc_cds*
99.6678
99.6797
99.6560
35.7311
4357144345150
0.0000
astatham-gatkSNPtvfunc_cds*
99.8283
99.7483
99.9083
29.1951
436011435940
0.0000
astatham-gatkSNPtimap_l250_m2_e0*
92.8085
87.1006
99.3169
90.7841
436264643623012
40.0000
bgallagher-sentieonSNPtvmap_l125_m0_e0het
98.2208
99.1138
97.3437
79.3814
436239436111915
12.6050
ckim-gatkSNPtvfunc_cds*
99.5776
99.7941
99.3620
38.5208
436294361280
0.0000
jmaeng-gatkSNPtvfunc_cds*
99.2038
99.7941
98.6205
39.0741
436294361610
0.0000
jmaeng-gatkSNP*map_l250_m2_e0*
70.5188
55.3329
97.1931
96.2932
43633522436312610
7.9365
ltrigg-rtg1SNPtvfunc_cds*
99.4080
99.8856
98.9350
27.2263
436654366470
0.0000
ltrigg-rtg2SNPtvfunc_cds*
99.5213
99.8856
99.1597
26.7631
436654366370
0.0000
cchapple-customSNPtvfunc_cds*
99.5556
99.9085
99.2053
32.6708
436744369350
0.0000
ghariani-varprowlINDEL*HG002compoundhet*
14.6445
14.5761
14.7135
73.0382
43672559343342512224561
97.7669
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
88.2507
80.5274
97.6127
83.3538
43671056437510745
42.0561
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
88.2507
80.5274
97.6127
83.3538
43671056437510745
42.0561