PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
74351-74400 / 86044 show all
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
45.0901
405114405131
33.3333
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6187
99.3868
99.8516
38.0325
405225403862
33.3333
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7907
99.6802
99.9015
41.5683
405213405743
75.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6557
99.3868
99.9261
40.5247
405225405530
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8398
99.6802
100.0000
44.8107
405213405200
hfeng-pmm2SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7907
99.6802
99.9014
44.8913
405213405241
25.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6680
99.4113
99.9261
41.1569
405324405630
0.0000
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8276
99.7048
99.9507
44.3071
405312405322
100.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8153
99.7048
99.9260
44.7261
405312405332
66.6667
ckim-isaacSNPtvmap_l150_m2_e0het
71.5812
55.9018
99.4848
80.5969
405431984055216
28.5714
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.6632
95.6583
99.7539
76.8156
40541844054100
0.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6927
99.4604
99.9261
41.2641
405522405830
0.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6757
94.4354
99.0249
47.4574
405623940624013
32.5000
jli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.7786
99.9754
44.9525
40569405611
100.0000
ghariani-varprowlSNPtvmap_l150_m2_e1homalt
98.7101
98.1132
99.3144
75.8171
40567840562815
53.5714
ndellapenna-hhgaSNP*map_l150_m0_e0homalt
99.5215
99.1930
99.8523
72.7346
405633405665
83.3333
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5475
95.7291
99.4363
77.3949
40571814057233
13.0435
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.6803
99.5094
99.8517
35.3111
405720403964
66.6667
ltrigg-rtg2SNP*map_l150_m0_e0homalt
99.5584
99.2419
99.8769
71.8698
405831405754
80.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7419
99.8278
99.6562
49.2016
405874058140
0.0000
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.4476
97.8775
99.0244
81.2649
40588840604019
47.5000
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.4479
95.7527
89.3636
86.9652
4058180401647889
18.6192
gduggal-bwafbSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7052
99.8278
99.5828
48.0230
405874058175
29.4118
jpowers-varprowlSNPtvmap_l150_m2_e1homalt
98.7711
98.1858
99.3635
77.7044
40597540592616
61.5385
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
54.3229
97.9257
37.5868
83.5805
4060864112682899
1.4499
ckim-dragenSNPtvmap_l150_m2_e0homalt
99.5708
99.4367
99.7053
69.4134
40602340601210
83.3333
raldana-dualsentieonSNP*map_l150_m0_e0homalt
99.5464
99.2908
99.8033
71.7833
406029406085
62.5000
jli-customSNPtvmap_l150_m2_e0homalt
99.6809
99.4612
99.9016
70.2372
406122406144
100.0000
jli-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7544
99.6076
99.9016
41.9475
406116406241
25.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9139
99.9016
99.9262
45.6684
40614406131
33.3333
bgallagher-sentieonSNPtvmap_l150_m2_e0homalt
99.6442
99.4612
99.8279
71.1244
406122406175
71.4286
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9016
99.9508
45.9204
40614406121
50.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7177
99.6321
99.8035
42.5670
406215406485
62.5000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
ndellapenna-hhgaSNPtvmap_l150_m0_e0*
98.3535
97.3167
99.4126
77.2836
406211240622411
45.8333
bgallagher-sentieonSNP*map_l150_m0_e0homalt
99.5466
99.3397
99.7544
73.4273
4062274062108
80.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.9262
99.8277
45.6225
40623405571
14.2857
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8403
99.9262
99.7545
48.2662
406234063102
20.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7790
99.6566
99.9017
44.3228
406314406641
25.0000
gduggal-bwavardSNPtvHG002compoundhethet
81.7704
86.9463
77.1761
55.8414
4063610450413321169
87.7628
ndellapenna-hhgaSNPtvmap_l150_m2_e0homalt
99.6933
99.5102
99.8771
72.6980
406320406354
80.0000
jli-customSNP*map_l150_m0_e0homalt
99.5955
99.3641
99.8280
71.6988
406326406377
100.0000
ltrigg-rtg1SNP*map_l150_m0_e0homalt
99.5834
99.3886
99.7790
75.2221
406425406399
100.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7046
99.9754
99.4352
43.5229
406414049235
21.7391
raldana-dualsentieonSNPtvmap_l150_m2_e0homalt
99.7424
99.5836
99.9017
70.2246
406617406642
50.0000
egarrison-hhgaSNPtvmap_l150_m2_e0homalt
99.7670
99.6081
99.9263
73.5886
406716406733
100.0000
ckim-isaacINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
84.4285
76.5337
94.1394
56.8627
406712474080254153
60.2362
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.7914
99.7547
99.8281
43.5620
406710406573
42.8571
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.8282
99.7547
99.9018
44.2986
406710407041
25.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8115
95.9651
99.7303
78.4840
40671714068111
9.0909