PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74251-74300 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4739 | 99.4515 | 93.6694 | 63.2423 | 3989 | 22 | 3995 | 270 | 19 | 7.0370 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.9622 | 96.2373 | 99.7500 | 82.0192 | 3990 | 156 | 3990 | 10 | 3 | 30.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7126 | 99.4764 | 99.9499 | 47.9937 | 3990 | 21 | 3990 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 93.8831 | 89.7436 | 98.4229 | 41.9180 | 3990 | 456 | 10235 | 164 | 145 | 88.4146 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5635 | 99.5014 | 99.6257 | 47.9205 | 3991 | 20 | 3992 | 15 | 4 | 26.6667 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0855 | 98.2042 | 97.9671 | 47.8546 | 3992 | 73 | 4048 | 84 | 36 | 42.8571 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5884 | 99.5263 | 99.6506 | 48.9164 | 3992 | 19 | 3993 | 14 | 1 | 7.1429 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6133 | 99.5263 | 99.7004 | 48.1016 | 3992 | 19 | 3993 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 82.5487 | 75.1600 | 91.5487 | 63.9730 | 3994 | 1320 | 4008 | 370 | 366 | 98.9189 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1067 | 98.2534 | 99.9750 | 43.4659 | 3994 | 71 | 3992 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.3244 | 99.6011 | 95.1494 | 59.1637 | 3995 | 16 | 3884 | 198 | 12 | 6.0606 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6794 | 99.6260 | 97.7506 | 58.4645 | 3996 | 15 | 3998 | 92 | 11 | 11.9565 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2263 | 99.6260 | 98.8298 | 49.0498 | 3996 | 15 | 4054 | 48 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0979 | 96.4062 | 99.8501 | 81.6005 | 3997 | 149 | 3997 | 6 | 4 | 66.6667 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1805 | 99.6759 | 98.6901 | 56.5693 | 3998 | 13 | 3993 | 53 | 5 | 9.4340 | |
| astatham-gatk | SNP | ti | map_l250_m1_e0 | * | 92.9011 | 87.3116 | 99.2552 | 90.3133 | 3998 | 581 | 3998 | 30 | 12 | 40.0000 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | homalt | 98.3526 | 96.7586 | 100.0000 | 69.7328 | 4000 | 134 | 3998 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7659 | 98.1114 | 99.4293 | 42.4615 | 4000 | 77 | 4007 | 23 | 16 | 69.5652 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 83.8433 | 0.0000 | 0.0000 | 4001 | 771 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | * | 87.3397 | 95.8793 | 80.1968 | 85.6633 | 4002 | 172 | 3993 | 986 | 44 | 4.4625 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8378 | 99.7756 | 99.9001 | 47.7433 | 4002 | 9 | 4002 | 4 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7260 | 99.8005 | 99.6515 | 49.5605 | 4003 | 8 | 4003 | 14 | 2 | 14.2857 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.0772 | 96.5750 | 99.6268 | 81.0951 | 4004 | 142 | 4004 | 15 | 7 | 46.6667 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1373 | 96.5750 | 99.7509 | 81.8576 | 4004 | 142 | 4004 | 10 | 3 | 30.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8509 | 99.8255 | 99.8764 | 47.5826 | 4004 | 7 | 4039 | 5 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7012 | 99.8255 | 99.5772 | 47.7317 | 4004 | 7 | 4004 | 17 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4357 | 99.8255 | 99.0490 | 49.7611 | 4004 | 7 | 4062 | 39 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8006 | 99.8255 | 99.7757 | 49.8187 | 4004 | 7 | 4004 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | homalt | 98.6939 | 98.0896 | 99.3057 | 75.8431 | 4005 | 78 | 4005 | 28 | 15 | 53.5714 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7261 | 99.8504 | 99.6021 | 48.7836 | 4005 | 6 | 4005 | 16 | 1 | 6.2500 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7261 | 99.8504 | 99.6021 | 49.5356 | 4005 | 6 | 4005 | 16 | 2 | 12.5000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7501 | 99.8753 | 99.6251 | 50.1743 | 4006 | 5 | 3986 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | tv | map_l150_m0_e0 | * | 95.4922 | 95.9751 | 95.0142 | 82.7299 | 4006 | 168 | 4002 | 210 | 43 | 20.4762 | |
| rpoplin-dv42 | SNP | * | map_l150_m0_e0 | homalt | 98.7551 | 97.9702 | 99.5527 | 75.0450 | 4006 | 83 | 4006 | 18 | 17 | 94.4444 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7634 | 99.8753 | 99.6517 | 47.8261 | 4006 | 5 | 4006 | 14 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6270 | 99.8753 | 99.3798 | 50.2161 | 4006 | 5 | 4006 | 25 | 1 | 4.0000 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | het | 92.6044 | 97.8749 | 87.8724 | 79.5506 | 4007 | 87 | 3775 | 521 | 513 | 98.4645 | |
| jpowers-varprowl | SNP | tv | map_l150_m2_e0 | homalt | 98.7557 | 98.1631 | 99.3555 | 77.7336 | 4008 | 75 | 4008 | 26 | 16 | 61.5385 | |
| astatham-gatk | SNP | * | map_l150_m0_e0 | homalt | 98.8775 | 98.0191 | 99.7511 | 73.7506 | 4008 | 81 | 4008 | 10 | 9 | 90.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6335 | 98.6470 | 98.6200 | 49.6901 | 4010 | 55 | 4002 | 56 | 5 | 8.9286 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | * | 61.7015 | 59.1244 | 64.5135 | 70.3568 | 4011 | 2773 | 4025 | 2214 | 2123 | 95.8898 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9552 | 65.9379 | 70.1000 | 59.0467 | 4011 | 2072 | 3927 | 1675 | 1645 | 98.2090 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.7836 | 58.7520 | 99.1512 | 28.6930 | 4011 | 2816 | 3738 | 32 | 26 | 81.2500 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 49.7829 | 0.0000 | 0.0000 | 4012 | 4047 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 49.7829 | 0.0000 | 0.0000 | 4012 | 4047 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.9148 | 78.4053 | 97.4964 | 52.0513 | 4012 | 1105 | 4011 | 103 | 89 | 86.4078 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0866 | 98.7946 | 99.3804 | 48.6184 | 4016 | 49 | 4010 | 25 | 11 | 44.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8434 | 94.7617 | 64.6239 | 86.6785 | 4016 | 222 | 3986 | 2182 | 61 | 2.7956 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4061 | 98.8192 | 100.0000 | 47.1948 | 4017 | 48 | 4019 | 0 | 0 | ||