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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
74201-74250 / 86044 show all
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.9380
99.2225
98.6552
35.2022
39563138885317
32.0755
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.0821
95.4655
94.7017
82.7295
39581883968222134
60.3604
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.4850
99.2977
99.6730
35.9284
39592839621312
92.3077
mlin-fermikitSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.3991
99.3730
97.4441
42.0040
396225396510497
93.2692
gduggal-snapvardSNPtvmap_l150_m2_e1homalt
97.7665
95.8394
99.7728
73.2888
3962172395297
77.7778
egarrison-hhgaINDELD6_15*hetalt
65.0139
48.4952
98.5994
42.7885
3964421035205043
86.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.6106
99.4231
99.7987
35.5602
396423396686
75.0000
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
99.1258
98.3867
99.8761
42.1136
396465403255
100.0000
ciseli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
96.7631
99.4231
94.2417
48.2590
396423397724384
34.5679
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
71.6485
93.5583
58.0534
81.2561
39652734044292258
1.9849
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.7486
99.5235
99.9748
31.2218
396819396210
0.0000
mlin-fermikitSNPtimap_l150_m2_e1homalt
61.4051
51.5794
75.8555
61.5254
39683725396812631193
94.4576
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.5851
99.5485
99.6217
39.7050
3969183950156
40.0000
jli-customINDEL*HG002compoundhethet
95.0677
97.0689
93.1473
77.2493
39741203738275245
89.0909
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.7525
99.1025
75.5722
63.2591
3975364028130233
2.5346
gduggal-snapfbSNPtvmap_l150_m0_e0*
94.8348
95.2324
94.4405
83.5277
3975199397523489
38.0342
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.6119
99.1025
98.1262
58.8223
39753639807619
25.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8493
99.7241
99.9749
34.2862
397611397611
100.0000
gduggal-snapplatSNP*map_l250_m1_e0het
87.0994
83.6172
90.8842
94.6651
39767793978399190
47.6190
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8619
99.7241
100.0000
34.3461
397611397600
jpowers-varprowlSNPtvmap_l150_m0_e0*
95.1094
95.2803
94.9391
85.9113
3977197397721255
25.9434
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8619
99.7492
99.9748
32.5060
397710396910
0.0000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.6127
99.7743
97.4780
44.0701
39789398110361
59.2233
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
ciseli-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
96.3834
97.8844
94.9277
48.0419
39798640052143
1.4019
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.4919
99.8244
97.1944
47.1301
39807398411558
50.4348
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5873
99.2770
99.8996
46.3020
398229398240
0.0000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.8997
99.9749
35.9073
39834398311
100.0000
astatham-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.8997
100.0000
34.2631
39834398300
ckim-isaacINDELI16_PLUS**
74.7295
62.4588
93.0005
54.4140
398323943986300193
64.3333
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.4107
85.7327
97.8942
35.5826
398466318133939
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.3890
39843398422
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
jlack-gatkSNP*map_l150_m0_e0homalt
98.5532
97.4566
99.6748
74.6529
398510439851310
76.9231
jli-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9749
99.9498
100.0000
34.6400
39852398500
gduggal-snapvardSNPtvHG002compoundhethet
75.6689
85.2771
68.0065
62.2530
3985688458521571046
48.4933
dgrover-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.7199
39861398600
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
99.9749
100.0000
34.3760
39861398600
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
65.3950
71.2167
60.4531
49.7479
39861611584438232953
77.2430
hfeng-pmm2SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
37.3409
39870398700
hfeng-pmm1SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
36.5834
39870398700
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6003
99.4016
99.7997
45.8452
398724398780
0.0000
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9875
100.0000
99.9749
33.2441
39870398711
100.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6626
99.4266
99.8998
45.8345
398823398840
0.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6875
99.4266
99.9499
46.9556
398823398820
0.0000
jlack-gatkINDEL*HG002compoundhethet
87.1214
97.4108
78.7981
78.1044
398810637501009902
89.3954
mlin-fermikitSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.0492
94.1010
98.0798
79.0164
398825039847811
14.1026
ltrigg-rtg2SNPtvmap_l150_m0_e0*
97.6140
95.5678
99.7497
64.5964
39891853986100
0.0000