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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
74101-74150 / 86044 show all
ckim-dragenSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8338
99.8720
99.7956
30.8168
39015390584
50.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8976
99.8720
99.9231
28.9976
39015390032
66.6667
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7826
99.6424
99.9232
75.5082
390114390132
66.6667
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3760
99.2368
99.5156
55.1976
3901303903193
15.7895
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.8082
99.6679
99.9488
76.8939
390213390221
50.0000
jli-customSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.8976
99.7954
28.9038
39024390381
12.5000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3583
99.6679
91.4059
82.1531
3902133914368228
61.9565
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5662
99.2623
99.8720
56.6274
390229390250
0.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.4849
99.6935
89.7936
83.3014
3903123915445231
51.9101
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
37.9377
35.2193
41.1108
54.0150
39037179390155885544
99.2126
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
78.1733
64.2951
99.6920
43.7482
3904216838841210
83.3333
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.3979
96.6584
94.1699
79.6348
39051353602223191
85.6502
dgrover-gatkSNPtvmap_l150_m1_e0homalt
99.4146
98.9863
99.8466
69.3080
390640390664
66.6667
gduggal-bwafbSNPtvmap_l150_m1_e0homalt
99.4020
98.9863
99.8211
73.3556
390640390675
71.4286
gduggal-snapplatSNPtvmap_l125_m0_e0het
89.8264
88.7753
90.9027
88.4354
39074943907391205
52.4297
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
96.0497
95.8548
96.2454
43.3162
3908169392215380
52.2876
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.1600
65.8800
96.0669
59.7785
39082024390816048
30.0000
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.7279
96.7327
96.7231
79.7872
3908132360112295
77.8689
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5292
99.4658
99.5927
55.2671
3910213912164
25.0000
bgallagher-sentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.1274
96.7822
93.5283
79.2155
39101303613250209
83.6000
anovak-vgSNPtvmap_l125_m0_e0het
76.8817
88.8434
67.7587
83.1340
391049139091860528
28.3871
gduggal-snapplatINDELD6_15*het
45.6195
33.7388
70.4153
67.7429
3911768130181268180
14.1956
ltrigg-rtg2INDEL*HG002compoundhethet
95.9824
95.5300
96.4390
67.6682
3911183395414679
54.1096
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.1387
99.5421
98.7386
58.2561
3913183914501
2.0000
dgrover-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.4266
96.8812
94.0151
79.6225
39141263613230189
82.1739
ltrigg-rtg2SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.6723
99.5675
97.7930
57.7847
3914173988902
2.2222
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
gduggal-snapvardSNPtvmap_l150_m2_e0homalt
97.7892
95.8854
99.7701
73.2819
3915168390697
77.7778
astatham-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.4126
96.9059
93.9646
79.4691
39151253612232195
84.0517
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
69.6749
94.4284
55.2038
82.9047
391523139413198130
4.0650
mlin-fermikitSNPtimap_l150_m2_e0homalt
61.2628
51.4049
75.7986
61.3196
39153701391512501181
94.4800
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.6961
99.6184
97.7906
64.7616
3916153895883
3.4091
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
44.0541
41.4041
47.0666
44.8610
39165542393944303649
82.3702
ckim-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.4384
96.9802
93.9449
79.5374
39181223615233194
83.2618
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4669
99.6693
99.2653
55.9536
3918133918290
0.0000
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.6651
96.3610
96.9712
69.6092
39191483906122111
90.9836
ghariani-varprowlINDELD6_15HG002complexvar*
76.3894
73.9155
79.0345
58.8274
3919138339131038969
93.3526
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
97.1473
97.7063
96.5946
58.2763
391992388613715
10.9489
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.3020
94.5490
92.0875
85.9655
3920226382932986
26.1398
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
anovak-vgSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.7688
92.5437
87.1556
81.5735
39223164207620247
39.8387
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3339
96.4347
96.2334
71.2425
39221453909153129
84.3137
gduggal-bwaplatINDELD6_15HG002complexvar*
83.5998
73.9721
96.1087
66.0264
392213803927159104
65.4088
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.8070
99.7711
95.9189
66.2738
39229392516716
9.5808
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.8848
99.7965
97.9897
57.5988
392383997821
1.2195
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7204
99.7965
99.6444
58.5971
392383923141
7.1429
ckim-dragenSNPtvmap_l150_m1_e0homalt
99.5559
99.4171
99.6950
66.7792
39232339231210
83.3333
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6192
99.8219
99.4173
56.4253
392473924230
0.0000