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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73951-74000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 82.8388 | 70.8349 | 99.7415 | 27.5927 | 3852 | 1586 | 3858 | 10 | 10 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 64.3918 | 47.8099 | 98.5834 | 40.4750 | 3853 | 4206 | 3410 | 49 | 42 | 85.7143 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 64.3918 | 47.8099 | 98.5834 | 40.4750 | 3853 | 4206 | 3410 | 49 | 42 | 85.7143 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.2698 | 98.4163 | 96.1497 | 78.7844 | 3853 | 62 | 3571 | 143 | 49 | 34.2657 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7155 | 99.4327 | 100.0000 | 57.3263 | 3856 | 22 | 3856 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6125 | 99.4327 | 99.7930 | 57.8718 | 3856 | 22 | 3856 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | homalt | 86.4046 | 85.8606 | 86.9555 | 67.4980 | 3856 | 635 | 3853 | 578 | 472 | 81.6609 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1772 | 98.9228 | 99.4328 | 67.8997 | 3857 | 42 | 3857 | 22 | 16 | 72.7273 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2920 | 98.7455 | 99.8446 | 31.3666 | 3857 | 49 | 3856 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.0858 | 99.4585 | 92.9344 | 71.8889 | 3857 | 21 | 3867 | 294 | 19 | 6.4626 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7285 | 99.4585 | 100.0000 | 57.4142 | 3857 | 21 | 3857 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6255 | 99.4585 | 99.7930 | 57.9022 | 3857 | 21 | 3857 | 8 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1904 | 98.9484 | 99.4336 | 67.7810 | 3858 | 41 | 3862 | 22 | 16 | 72.7273 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0886 | 98.9484 | 99.2292 | 67.4228 | 3858 | 41 | 3862 | 30 | 18 | 60.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9487 | 98.5441 | 99.3567 | 82.1497 | 3858 | 57 | 3861 | 25 | 16 | 64.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8850 | 98.5441 | 99.2284 | 79.4839 | 3858 | 57 | 3858 | 30 | 23 | 76.6667 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | * | 68.9230 | 53.4340 | 97.0573 | 96.2285 | 3859 | 3363 | 3859 | 117 | 9 | 7.6923 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1784 | 99.0254 | 99.3318 | 68.0069 | 3861 | 38 | 3865 | 26 | 15 | 57.6923 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7288 | 99.5616 | 99.8965 | 59.3927 | 3861 | 17 | 3861 | 4 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.5412 | 99.3311 | 95.8146 | 61.4853 | 3861 | 26 | 3846 | 168 | 74 | 44.0476 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1732 | 94.9348 | 95.4128 | 68.8499 | 3861 | 206 | 3848 | 185 | 153 | 82.7027 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.6695 | 93.1741 | 88.2960 | 82.0927 | 3863 | 283 | 4021 | 533 | 266 | 49.9062 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | het | 81.4607 | 94.3576 | 71.6654 | 76.0047 | 3863 | 231 | 3804 | 1504 | 1483 | 98.6037 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6646 | 99.3826 | 99.9483 | 59.5457 | 3863 | 24 | 3863 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8720 | 95.8799 | 99.9486 | 22.7273 | 3863 | 166 | 3891 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | * | * | 60.4248 | 56.9575 | 64.3415 | 68.1361 | 3864 | 2920 | 3874 | 2147 | 2111 | 98.3232 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6109 | 99.4340 | 97.8014 | 61.3838 | 3865 | 22 | 3870 | 87 | 83 | 95.4023 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7607 | 94.8001 | 96.7410 | 36.3288 | 3865 | 212 | 3859 | 130 | 125 | 96.1538 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7108 | 98.7484 | 98.6731 | 78.8824 | 3866 | 49 | 3867 | 52 | 45 | 86.5385 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4469 | 98.9759 | 99.9224 | 33.5509 | 3866 | 40 | 3865 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7163 | 99.4597 | 99.9741 | 59.5798 | 3866 | 21 | 3866 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6158 | 95.9792 | 99.3093 | 24.9856 | 3867 | 162 | 3882 | 27 | 26 | 96.2963 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.2808 | 99.7163 | 94.9614 | 65.1121 | 3867 | 11 | 3694 | 196 | 8 | 4.0816 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3832 | 98.7739 | 100.0000 | 75.8608 | 3867 | 48 | 3884 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4343 | 99.0271 | 99.8449 | 39.8008 | 3868 | 38 | 3863 | 6 | 3 | 50.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.4469 | 99.5112 | 99.3827 | 62.5253 | 3868 | 19 | 3864 | 24 | 9 | 37.5000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 56.7821 | 0.0000 | 0.0000 | 3868 | 2944 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.6612 | 98.0487 | 99.2815 | 73.6565 | 3869 | 77 | 3869 | 28 | 15 | 53.5714 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6908 | 99.5369 | 99.8452 | 60.6918 | 3869 | 18 | 3869 | 6 | 6 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6651 | 99.7679 | 99.5625 | 58.6903 | 3869 | 9 | 3869 | 17 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5113 | 99.0527 | 99.9742 | 29.4879 | 3869 | 37 | 3868 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3011 | 99.7679 | 98.8387 | 65.0271 | 3869 | 9 | 3830 | 45 | 3 | 6.6667 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5424 | 99.7679 | 99.3178 | 59.4259 | 3869 | 9 | 3931 | 27 | 1 | 3.7037 | |
| ckim-gatk | SNP | * | map_l250_m1_e0 | * | 69.0461 | 53.5724 | 97.0891 | 96.1568 | 3869 | 3353 | 3869 | 116 | 9 | 7.7586 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8581 | 99.7937 | 99.9225 | 58.9725 | 3870 | 8 | 3870 | 3 | 1 | 33.3333 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4762 | 96.4847 | 96.4677 | 49.2144 | 3870 | 141 | 3960 | 145 | 74 | 51.0345 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4605 | 99.8195 | 99.1042 | 60.8242 | 3871 | 7 | 3872 | 35 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | map_l150_m1_e0 | homalt | 98.7251 | 98.1247 | 99.3330 | 75.8368 | 3872 | 74 | 3872 | 26 | 16 | 61.5385 | |