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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
73601-73650 / 86044 show all
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
jmaeng-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.1285
98.7253
99.5351
51.6909
36404736401714
82.3529
jli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.1826
98.7253
99.6441
48.7010
36404736401310
76.9231
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.7617
96.8094
92.7988
67.6203
36411203634282273
96.8085
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6034
99.3181
99.8903
51.3153
364125364244
100.0000
egarrison-hhgaINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
97.5105
95.6899
99.4017
30.5702
364116436552222
100.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6443
99.5626
99.7262
54.5715
3642163642105
50.0000
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.6989
99.5626
99.8355
53.1956
364216364161
16.6667
bgallagher-sentieonINDEL*map_l100_m2_e0*
98.3285
98.6461
98.0129
85.9953
36435036507417
22.9730
ciseli-customSNPtvHG002compoundhethet
56.8474
77.9585
44.7336
53.7648
364310303678454489
1.9586
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7400
99.6173
99.8629
52.8317
364414364351
20.0000
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6854
99.4272
99.9450
44.5461
364521363322
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5630
99.4272
99.6991
49.6904
36452136451111
100.0000
dgrover-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7674
99.6720
99.8630
53.6272
364612364551
20.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.1325
94.2362
84.5533
48.1916
36462233246593548
92.4115
ckim-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7401
99.6720
99.8083
54.5545
364612364572
28.5714
ckim-dragenINDEL*lowcmp_SimpleRepeat_triTR_11to50het
99.7127
99.6993
99.7261
53.8549
3647113641103
30.0000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.1437
60.1120
93.3897
54.7163
365024223645258193
74.8062
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.2927
98.9965
99.5907
51.8966
36503736501512
80.0000
egarrison-hhgaINDEL*map_l100_m2_e1*
97.3869
97.1778
97.5968
97.6235
365010636559041
45.5556
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.2793
99.0236
99.5363
51.7187
36513636491715
88.2353
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
85.5129
76.5088
96.9190
34.7374
365111213649116114
98.2759
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3201
99.0507
99.5909
51.8830
36523536521512
80.0000
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.6043
76.5298
99.7333
31.0028
36521120149644
100.0000
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0814
91.6918
96.5990
62.3710
36533313664129115
89.1473
astatham-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9904
93.0008
95.0013
54.6571
36542753649192181
94.2708
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3072
99.1321
99.4829
51.2667
36553236551916
84.2105
cchapple-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7813
99.6999
99.8628
43.7307
365511363955
100.0000
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.9905
59.8984
93.4066
85.0088
36552447365525842
16.2791
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
73.3622
60.1943
93.9043
54.3233
365524173651237195
82.2785
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3613
99.1592
99.5643
51.5120
36563136561613
81.2500
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.6052
94.2754
99.0530
53.1678
365622236613517
48.5714
gduggal-bwavardINDEL*HG002compoundhethet
23.2106
89.3014
13.3387
58.9532
365643837932464323937
97.1351
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4527
93.8414
99.2135
55.2222
365724036582924
82.7586
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
99.3750
99.1863
99.5644
51.3896
36573036571613
81.2500
dgrover-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0434
93.0771
95.0299
54.7829
36572723652191179
93.7173
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3774
93.8671
99.0257
55.4228
365823936593629
80.5556
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7545
99.7818
99.7273
51.7500
3658836571010
100.0000
ckim-dragenINDEL*map_l100_m2_e1*
97.0145
97.3908
96.6411
87.1665
365898365412720
15.7480
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.3072
97.2880
99.3480
72.0840
365910236572422
91.6667
rpoplin-dv42INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.3072
97.2880
99.3480
72.0840
365910236572422
91.6667
raldana-dualsentieonINDEL*map_l100_m2_e1*
97.9928
97.4175
98.5749
83.4180
36599736665313
24.5283
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8636
99.8363
99.8908
48.6619
36606366044
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8228
99.8636
99.7820
48.9282
36615366188
100.0000
hfeng-pmm1INDEL*map_l100_m2_e1*
98.1906
97.4707
98.9213
83.6789
3661953668409
22.5000
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8909
99.8909
99.8909
48.7917
36624366244
100.0000
rpoplin-dv42INDEL*map_l100_m2_e1*
97.9158
97.4973
98.3378
98.2252
36629436686229
46.7742
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8365
99.9182
99.7549
50.2169
36633366399
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9182
99.9454
99.8909
51.3011
36642366444
100.0000