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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72951-73000 / 86044 show all
asubramanian-gatkINDELD1_5map_siren*
94.8669
91.8674
98.0688
84.1980
32422873250648
12.5000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
92.8582
89.4839
96.4970
68.0383
3242381322311742
35.8974
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
88.5500
89.5115
87.6089
73.2264
32433803217455346
76.0440
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.0400
99.0531
93.2047
66.1798
3243313237236234
99.1525
jlack-gatkSNPtimap_l250_m2_e1het
92.2399
98.3631
86.8344
94.0808
324554324549242
8.5366
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.8416
83.8718
32.4948
49.6168
3245624326867896766
99.6612
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.7955
92.0590
99.8481
42.7080
3246280328754
80.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.7955
92.0590
99.8481
42.7080
3246280328754
80.0000
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7579
92.9553
96.6318
48.7341
32462464246148137
92.5676
asubramanian-gatkINDEL*map_l100_m2_e0*
92.1174
87.8960
96.7646
96.1178
3246447326010917
15.5963
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.0250
86.3068
54.7854
60.5199
3246515411033923132
92.3349
asubramanian-gatkSNPtvmap_l125_m1_e0het
48.5238
32.0561
99.7847
92.9805
32466880324571
14.2857
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.9872
99.1753
96.8273
68.0073
3247273235106103
97.1698
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
89.1434
91.8292
86.6102
71.1229
32482892016231173094
99.2621
raldana-dualsentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.8485
84.9895
99.9117
39.0086
3250574339333
100.0000
dgrover-gatkSNPtimap_l250_m2_e1het
98.3512
98.5450
98.1582
91.6782
32514832516116
26.2295
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
90.7855
83.8319
98.9970
73.1888
32516273257338
24.2424
asubramanian-gatkSNPtvmap_l100_m2_e0homalt
52.1579
35.2833
99.9692
82.1867
32515963325110
0.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.3376
93.0985
97.6870
52.9536
325124132527770
90.9091
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4163
99.3280
99.5048
58.5822
32522232151613
81.2500
gduggal-snapvardINDELD6_15HG002complexvar*
66.6908
61.3353
73.0708
52.3301
3252205032291190878
73.7815
hfeng-pmm1SNPtimap_l250_m2_e1het
98.7703
98.6056
98.9355
89.0938
3253463253358
22.8571
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2282
99.3586
97.1232
68.6872
32532132419693
96.8750
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.1128
65.0730
97.6884
78.4680
3253174632547759
76.6234
gduggal-bwaplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.1128
65.0730
97.6884
78.4680
3253174632547759
76.6234
ciseli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
57.8173
89.4447
42.7138
55.6700
3254384323643404025
92.7419
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
79.2799
83.4829
75.4797
66.1968
325564431861035247
23.8647
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2738
99.4197
97.1540
68.7190
32551932439592
96.8421
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.0806
99.4197
96.7771
68.3987
3255193243108105
97.2222
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.1994
99.4197
97.0087
68.4176
325519324310097
97.0000
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2668
99.4808
99.0537
68.1013
32571732453129
93.5484
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.2901
99.5113
97.0984
68.6486
32581632469794
96.9072
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.6730
92.4844
99.0893
41.0583
326126538083533
94.2857
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.6730
92.4844
99.0893
41.0583
326126538083533
94.2857
gduggal-bwafbINDELI16_PLUS**
66.2146
51.1369
93.9014
38.2990
326131163372219218
99.5434
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
92.1912
88.4459
96.2678
41.3787
3261426325012683
65.8730
ciseli-customSNPtvmap_l150_m1_e0homalt
85.3488
82.6913
88.1828
71.9082
32636833261437339
77.5744
hfeng-pmm2SNPtimap_l250_m2_e1het
98.4165
98.9088
97.9292
90.8817
3263363263697
10.1449
hfeng-pmm3SNPtimap_l250_m2_e1het
98.9688
98.9088
99.0288
89.4045
3263363263323
9.3750
ndellapenna-hhgaINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
64.4666
47.9448
98.3624
43.7187
3266354627634636
78.2609
bgallagher-sentieonSNPtimap_l250_m2_e1het
98.2995
98.9997
97.6091
90.8150
32663332668016
20.0000
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
86.8762
81.9779
92.3970
60.2527
32667183342275210
76.3636
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_triTR_11to50het
90.8048
89.3111
92.3494
45.1133
32673914092339139
41.0029
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
91.8726
90.2567
93.5475
72.9167
32703533320229219
95.6332
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3335
93.6712
99.1515
51.7685
327122132722823
82.1429
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.2496
92.7964
99.9698
39.4554
3272254331211
100.0000
jmaeng-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.2496
92.7964
99.9698
39.4554
3272254331211
100.0000
hfeng-pmm1INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2932
93.7285
99.0021
51.9820
327321932743327
81.8182