PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72901-72950 / 86044 show all
ckim-gatkSNPtimap_l150_m0_e0het
76.3401
63.1156
96.5755
93.3356
32171880321511418
15.7895
ciseli-customINDEL*lowcmp_SimpleRepeat_triTR_11to50het
84.3637
87.9716
81.0401
48.2088
32184403257762318
41.7323
bgallagher-sentieonSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2753
99.1071
99.4439
65.2571
3219293219184
22.2222
hfeng-pmm2SNPtimap_l250_m2_e0het
98.4404
98.9244
97.9610
90.8174
3219353219677
10.4478
hfeng-pmm3SNPtimap_l250_m2_e0het
98.9700
98.9244
99.0157
89.3221
3219353219323
9.3750
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.0576
82.2478
99.5062
84.1820
322069532241614
87.5000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
raldana-dualsentieonINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.4655
91.3500
99.9693
40.4962
3221305326111
100.0000
bgallagher-sentieonSNPtimap_l250_m2_e0het
98.3066
99.0166
97.6068
90.7462
32223232227916
20.2532
anovak-vgINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
69.4306
91.0941
56.0913
63.9073
3222315525841163904
94.8494
gduggal-snapvardSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.5819
93.2562
98.0265
65.1478
322223331796422
34.3750
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
62.0536
50.9807
79.2711
51.4534
322330992436637614
96.3893
gduggal-bwafbSNPtvsegduphomalt
99.6445
99.5368
99.7524
90.8111
322315322388
100.0000
gduggal-bwavardSNPtimap_l250_m2_e1het
88.2543
97.7266
80.4560
93.2754
322475321178022
2.8205
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
cchapple-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3846
99.2919
99.4776
66.9410
3225233237173
17.6471
ghariani-varprowlSNPtimap_l250_m2_e1het
95.1903
97.7872
92.7278
92.3245
322673322625351
20.1581
gduggal-snapfbSNPtvsegduphomalt
99.3840
99.6603
99.1093
91.8109
3227113227298
27.5862
jli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.3229
99.3534
99.2923
66.7825
3227213227236
26.0870
anovak-vgSNPtvmap_l150_m2_e1homalt
87.3530
78.1084
99.0798
73.8866
322990532303023
76.6667
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.7550
98.6561
96.8703
68.6124
323044321910499
95.1923
eyeh-varpipeSNPtimap_l250_m2_e0het
98.6087
99.2624
97.9636
91.2085
3230243175664
6.0606
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.6237
98.6866
98.5609
63.0877
32314332194744
93.6170
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
rpoplin-dv42SNPtvsegduphomalt
99.7378
99.8456
99.6302
90.4939
3233532331212
100.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.9795
98.7477
93.3623
66.3775
3233413221229194
84.7162
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.2002
98.7477
99.6569
58.1790
3233413195117
63.6364
ghariani-varprowlSNPtvsegduphomalt
99.0657
99.8456
98.2979
91.0501
3233532345629
51.7857
egarrison-hhgaSNPtvsegduphomalt
99.7379
99.8765
99.5996
90.3915
3234432341313
100.0000
ndellapenna-hhgaSNPtvsegduphomalt
99.6917
99.8765
99.5077
90.2309
3234432341616
100.0000
eyeh-varpipeSNPtvsegduphomalt
99.8439
99.8765
99.8114
90.5570
32344317666
100.0000
cchapple-customSNPtvsegduphomalt
99.8144
99.9074
99.7215
89.1707
32353322399
100.0000
bgallagher-sentieonSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.4615
32353323566
100.0000
jli-customSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.3818
32353323566
100.0000
jpowers-varprowlSNPtvsegduphomalt
99.1421
99.9074
98.3886
91.4237
3235332365329
54.7170
jlack-gatkSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.7982
32353323566
100.0000
hfeng-pmm2SNPtvsegduphomalt
99.8919
99.9074
99.8765
90.2428
32353323544
100.0000
hfeng-pmm3SNPtvsegduphomalt
99.8920
99.9382
99.8457
90.1933
32362323655
100.0000
hfeng-pmm1SNPtvsegduphomalt
99.8765
99.9382
99.8149
90.2264
32362323666
100.0000
dgrover-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.5365
32362323666
100.0000
raldana-dualsentieonSNPtimap_l250_m2_e1het
97.5433
98.0903
97.0024
89.5913
32366332361002
2.0000
raldana-dualsentieonSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.2756
32362323666
100.0000
ltrigg-rtg1SNPtvsegduphomalt
99.6765
99.9382
99.4161
89.9204
3236232351919
100.0000
ltrigg-rtg2SNPtvsegduphomalt
99.6765
99.9382
99.4161
89.5171
3236232351919
100.0000
astatham-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.4470
32362323666
100.0000
ckim-dragenSNPtvsegduphomalt
99.9074
99.9691
99.8458
89.2553
32371323755
100.0000
rpoplin-dv42SNPtimap_l250_m2_e1het
98.3298
98.1510
98.5093
88.6573
32386132384929
59.1837
gduggal-bwaplatSNPtimap_l150_m0_e0*
58.2240
41.2034
99.2037
94.0967
3239462232392611
42.3077