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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1455 1456 1457 1458 1459 1460 1461 1462 1463 ... 1720 1721 » 72901-72950 / 86044 show all
ckim-gatk	SNP	ti	map_l150_m0_e0	het	76.3401	63.1156	96.5755	93.3356	3217	1880	3215	114	18	15.7895
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	84.3637	87.9716	81.0401	48.2088	3218	440	3257	762	318	41.7323
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.2753	99.1071	99.4439	65.2571	3219	29	3219	18	4	22.2222
hfeng-pmm2	SNP	ti	map_l250_m2_e0	het	98.4404	98.9244	97.9610	90.8174	3219	35	3219	67	7	10.4478
hfeng-pmm3	SNP	ti	map_l250_m2_e0	het	98.9700	98.9244	99.0157	89.3221	3219	35	3219	32	3	9.3750
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.0576	82.2478	99.5062	84.1820	3220	695	3224	16	14	87.5000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.4655	91.3500	99.9693	40.4962	3221	305	3261	1	1	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.4655	91.3500	99.9693	40.4962	3221	305	3261	1	1	100.0000
bgallagher-sentieon	SNP	ti	map_l250_m2_e0	het	98.3066	99.0166	97.6068	90.7462	3222	32	3222	79	16	20.2532
anovak-vg	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	69.4306	91.0941	56.0913	63.9073	3222	315	5258	4116	3904	94.8494
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	95.5819	93.2562	98.0265	65.1478	3222	233	3179	64	22	34.3750
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	62.0536	50.9807	79.2711	51.4534	3223	3099	2436	637	614	96.3893
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	62.0536	50.9807	79.2711	51.4534	3223	3099	2436	637	614	96.3893
gduggal-bwafb	SNP	tv	segdup	homalt	99.6445	99.5368	99.7524	90.8111	3223	15	3223	8	8	100.0000
gduggal-bwavard	SNP	ti	map_l250_m2_e1	het	88.2543	97.7266	80.4560	93.2754	3224	75	3211	780	22	2.8205
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	85.7504	85.7485	85.7523	74.5958	3225	536	3220	535	212	39.6262
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	85.7504	85.7485	85.7523	74.5958	3225	536	3220	535	212	39.6262
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3846	99.2919	99.4776	66.9410	3225	23	3237	17	3	17.6471
ghariani-varprowl	SNP	ti	map_l250_m2_e1	het	95.1903	97.7872	92.7278	92.3245	3226	73	3226	253	51	20.1581
gduggal-snapfb	SNP	tv	segdup	homalt	99.3840	99.6603	99.1093	91.8109	3227	11	3227	29	8	27.5862
jli-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3229	99.3534	99.2923	66.7825	3227	21	3227	23	6	26.0870
anovak-vg	SNP	tv	map_l150_m2_e1	homalt	87.3530	78.1084	99.0798	73.8866	3229	905	3230	30	23	76.6667
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.7550	98.6561	96.8703	68.6124	3230	44	3219	104	99	95.1923
eyeh-varpipe	SNP	ti	map_l250_m2_e0	het	98.6087	99.2624	97.9636	91.2085	3230	24	3175	66	4	6.0606
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6237	98.6866	98.5609	63.0877	3231	43	3219	47	44	93.6170
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.5532	99.4766	99.6299	68.0748	3231	17	3230	12	5	41.6667
rpoplin-dv42	SNP	tv	segdup	homalt	99.7378	99.8456	99.6302	90.4939	3233	5	3233	12	12	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	95.9795	98.7477	93.3623	66.3775	3233	41	3221	229	194	84.7162
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2002	98.7477	99.6569	58.1790	3233	41	3195	11	7	63.6364
ghariani-varprowl	SNP	tv	segdup	homalt	99.0657	99.8456	98.2979	91.0501	3233	5	3234	56	29	51.7857
egarrison-hhga	SNP	tv	segdup	homalt	99.7379	99.8765	99.5996	90.3915	3234	4	3234	13	13	100.0000
ndellapenna-hhga	SNP	tv	segdup	homalt	99.6917	99.8765	99.5077	90.2309	3234	4	3234	16	16	100.0000
eyeh-varpipe	SNP	tv	segdup	homalt	99.8439	99.8765	99.8114	90.5570	3234	4	3176	6	6	100.0000
cchapple-custom	SNP	tv	segdup	homalt	99.8144	99.9074	99.7215	89.1707	3235	3	3223	9	9	100.0000
bgallagher-sentieon	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.4615	3235	3	3235	6	6	100.0000
jli-custom	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.3818	3235	3	3235	6	6	100.0000
jpowers-varprowl	SNP	tv	segdup	homalt	99.1421	99.9074	98.3886	91.4237	3235	3	3236	53	29	54.7170
jlack-gatk	SNP	tv	segdup	homalt	99.8611	99.9074	99.8149	89.7982	3235	3	3235	6	6	100.0000
hfeng-pmm2	SNP	tv	segdup	homalt	99.8919	99.9074	99.8765	90.2428	3235	3	3235	4	4	100.0000
hfeng-pmm3	SNP	tv	segdup	homalt	99.8920	99.9382	99.8457	90.1933	3236	2	3236	5	5	100.0000
hfeng-pmm1	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	90.2264	3236	2	3236	6	6	100.0000
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
raldana-dualsentieon	SNP	ti	map_l250_m2_e1	het	97.5433	98.0903	97.0024	89.5913	3236	63	3236	100	2	2.0000
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
ltrigg-rtg1	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.9204	3236	2	3235	19	19	100.0000
ltrigg-rtg2	SNP	tv	segdup	homalt	99.6765	99.9382	99.4161	89.5171	3236	2	3235	19	19	100.0000
astatham-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.4470	3236	2	3236	6	6	100.0000
ckim-dragen	SNP	tv	segdup	homalt	99.9074	99.9691	99.8458	89.2553	3237	1	3237	5	5	100.0000
rpoplin-dv42	SNP	ti	map_l250_m2_e1	het	98.3298	98.1510	98.5093	88.6573	3238	61	3238	49	29	59.1837
gduggal-bwaplat	SNP	ti	map_l150_m0_e0	*	58.2240	41.2034	99.2037	94.0967	3239	4622	3239	26	11	42.3077

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