PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72751-72800 / 86044 show all
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.2450
95.6628
96.8343
65.6357
31321423120102100
98.0392
gduggal-snapplatINDELI6_15HG002compoundhethetalt
53.1182
36.6874
96.2041
33.7320
31325405309212297
79.5082
gduggal-snapplatINDELI6_15*hetalt
52.6793
36.6390
93.7008
46.4917
313354183094208167
80.2885
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
63.5703
52.8321
79.7871
32.1688
313427981109228102788
99.2171
jlack-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.4922
99.5870
99.3976
71.7079
3135133135199
47.3684
ckim-vqsrSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7614
99.6188
99.9044
71.9607
313612313633
100.0000
ckim-vqsrINDELD16_PLUS*het
97.9651
99.2719
96.6923
79.4267
31362328949969
69.6970
ciseli-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.1047
96.5517
66.9981
74.4486
31361123167156081
5.1923
dgrover-gatkINDELD16_PLUS*het
97.8168
99.3036
96.3739
78.4222
313722289710966
60.5505
jli-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7298
99.6506
99.8091
71.0989
313711313764
66.6667
bgallagher-sentieonINDELD16_PLUS*het
97.5876
99.3036
95.9298
78.0298
313722289912376
61.7886
astatham-gatkINDELD16_PLUS*het
97.7337
99.3036
96.2126
78.4600
313722289611470
61.4035
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
60.1249
45.9646
86.8947
58.2953
313836893176479423
88.3090
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
93.5628
88.9960
98.6237
42.7471
313838831534440
90.9091
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
93.5628
88.9960
98.6237
42.7471
313838831534440
90.9091
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.9690
95.8766
98.0866
62.3435
313913531276159
96.7213
ckim-gatkINDELD16_PLUS*het
97.6163
99.3985
95.8968
79.2687
314019289812470
56.4516
mlin-fermikitSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
96.5257
96.6749
96.3770
70.3153
3140108313911863
53.3898
qzeng-customSNPtimap_l150_m0_e0het
73.7997
61.6049
92.0141
94.1071
314019573134272231
84.9265
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8252
99.7776
99.8728
71.9221
31417314143
75.0000
jmaeng-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8093
99.7776
99.8411
72.0082
31417314153
60.0000
qzeng-customINDELD1_5map_siren*
93.2868
89.0337
97.9666
83.5685
314238732286743
64.1791
dgrover-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8411
99.8094
99.8729
71.5397
31426314243
75.0000
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.3969
99.2733
95.5900
55.8480
3142233143145133
91.7241
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7312
99.8094
99.6531
71.4710
314263160118
72.7273
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7460
99.8094
99.6827
70.4841
314263142106
60.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8570
99.8412
99.8729
71.3127
31435314343
75.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.9473
99.3365
94.6703
50.0000
3144213144177175
98.8701
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9613
99.3365
98.5889
49.3810
31442131444543
95.5556
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0239
99.3681
98.6821
49.3000
31452031454242
100.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
95.1611
91.0564
99.6533
48.4903
31463093162115
45.4545
jli-customSNPtimap_l250_m2_e0het
97.8393
96.7117
98.9934
87.4744
314710731473216
50.0000
asubramanian-gatkINDEL*map_l100_m1_e0*
92.0378
87.7579
96.7564
95.8853
3147439316210617
16.0377
jmaeng-gatkINDEL*HG002complexvarhetalt
91.1572
85.1041
98.1374
66.7119
314855133726464
100.0000
gduggal-snapfbSNPtimap_l250_m2_e1het
94.1247
95.4229
92.8614
87.6593
31481513148242125
51.6529
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9318
99.4945
98.3755
50.6856
31491631495250
96.1538
ckim-vqsrSNPtvsegduphomalt
98.5612
97.3132
99.8416
90.0895
315187315155
100.0000
ckim-isaacINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
92.2162
86.6135
98.5938
42.4667
315148731554526
57.7778
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.5967
90.2348
97.2188
50.5577
315134131469073
81.1111
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.7464
96.2737
87.6259
45.7712
315212287031229548
44.5891
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.9533
99.6209
96.3407
45.9172
3153123133119118
99.1597
ciseli-customINDELI6_15*het
44.4423
31.4363
75.8046
53.6729
3154687932271030925
89.8058
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
86.8622
82.8909
91.2332
40.8368
3154651156115079
52.6667
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
93.7450
89.4498
98.4735
43.0447
315437231614944
89.7959
ndellapenna-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
93.7450
89.4498
98.4735
43.0447
315437231614944
89.7959
gduggal-bwavardSNPtvsegduphomalt
98.3926
97.4676
99.3354
90.2442
31568231392119
90.4762
gduggal-snapvardSNPtvsegduphomalt
98.3768
97.4676
99.3031
90.1749
31568231352221
95.4545
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.7488
99.7472
97.7702
52.2408
3157831577271
98.6111
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.1348
99.7788
90.9039
60.3967
315873158316314
99.3671
cchapple-customSNPtimap_l250_m2_e1het
95.5838
95.7563
95.4120
91.7154
3159140316115241
26.9737