PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
72701-72750 / 86044 show all
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3882
96.1994
96.5777
62.9694
30881223076109106
97.2477
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1651
96.1994
98.1505
57.1994
308812230785857
98.2759
gduggal-snapplatSNPtvHG002compoundhethomalt
93.1015
91.1747
95.1114
51.4204
30892993074158115
72.7848
gduggal-bwaplatSNPtvHG002compoundhethomalt
94.3411
91.1747
97.7352
50.1035
308929930647167
94.3662
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6736
97.5987
99.7724
40.0818
308976306877
100.0000
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.4871
98.2529
96.7332
77.3918
309355319810835
32.4074
gduggal-snapvardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.5113
95.2894
72.7551
82.9109
30951533095115930
2.5884
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.6995
85.5368
87.8943
72.5250
30995243093426415
97.4178
ltrigg-rtg1SNPtimap_l250_m2_e1het
96.8015
94.0285
99.7430
81.3425
3102197310582
25.0000
ckim-isaacSNPtvsegduphomalt
97.8395
95.7999
99.9678
86.9397
3102136310211
100.0000
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7805
96.6355
96.9260
63.2253
310210830909893
94.8980
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7654
96.6355
96.8956
63.2180
310210830909994
94.9495
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7502
96.6355
96.8652
63.0530
3102108309010094
94.0000
cchapple-customSNPtilowcmp_SimpleRepeat_diTR_11to50het
98.9388
98.5705
99.3099
68.9036
31034531662216
72.7273
gduggal-snapfbSNPtimap_l250_m2_e0het
94.1319
95.3903
92.9063
87.5637
31041503104237122
51.4768
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.8591
96.7290
96.9897
63.1840
310510530939693
96.8750
asubramanian-gatkSNPtvmap_l100_m0_e0*
43.7760
28.0314
99.8714
92.3134
31077977310741
25.0000
jmaeng-gatkSNP*map_l250_m2_e0het
73.7629
59.8383
96.1336
96.8561
3108208631081259
7.2000
jpowers-varprowlSNPtimap_l250_m2_e1het
94.1266
94.2407
94.0127
92.2458
3109190310919856
28.2828
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
80.2639
78.0371
82.6214
55.4597
31098753114655601
91.7557
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.2192
98.7929
99.6492
71.7503
3110383125119
81.8182
ckim-isaacINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
84.2828
78.0622
91.5805
48.9211
31108743100285235
82.4561
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0126
98.2938
99.7419
42.5046
311154309188
100.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.0585
36.9961
43.6736
81.3091
3111529831794100363
8.8537
qzeng-customSNPtimap_l250_m2_e0*
74.3996
62.1406
92.6844
95.5558
311218963104245206
84.0816
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
82.9227
78.1124
88.3643
60.1791
31128723182419327
78.0430
asubramanian-gatkSNPtvmap_l100_m1_e0homalt
51.2011
34.4134
99.9679
81.0990
31125931311210
0.0000
ckim-vqsrSNPtvmap_l125_m0_e0*
63.5371
46.9462
98.2639
92.6176
311335183113550
0.0000
gduggal-bwavardINDELI6_15HG002complexvar*
69.2732
64.9624
74.1967
53.0461
3113167930481060990
93.3962
gduggal-bwavardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.8459
95.8744
91.9015
78.3452
3114134309827332
11.7216
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
93.6827
88.3154
99.7447
41.6713
3114412312688
100.0000
rpoplin-dv42INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
93.6827
88.3154
99.7447
41.6713
3114412312688
100.0000
asubramanian-gatkSNPtimap_l125_m2_e0homalt
43.0457
27.4256
100.0000
87.5971
31158243311500
ckim-gatkSNP*map_l250_m2_e0het
73.8651
59.9923
96.0839
96.7509
31162078311612710
7.8740
cchapple-customSNPtimap_l250_m2_e0het
95.5856
95.7898
95.3823
91.6456
3117137311915140
26.4901
jlack-gatkINDELD16_PLUS*het
95.4976
98.6705
92.5225
78.1303
3117422883233133
57.0815
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
79.7819
78.2631
81.3608
56.9182
31188663121715658
92.0280
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.5762
95.2963
88.1356
47.4691
31201542808378341
90.2116
anovak-vgINDELD1_5map_siren*
87.4723
88.4103
86.5539
80.0641
31204093122485188
38.7629
jpowers-varprowlINDELI16_PLUS**
56.3839
48.9258
66.5246
59.4066
31203257312215711564
99.5544
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_diTR_11to50het
99.1764
99.1423
99.2106
64.9939
3121273142253
12.0000
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5353
76.8626
89.1121
55.4494
31269413282401398
99.2519
ndellapenna-hhgaSNPtimap_l250_m2_e0het
97.7952
96.0971
99.5543
88.3585
31271273127146
42.8571
asubramanian-gatkSNPtvsegduphomalt
98.1636
96.5720
99.8085
89.8001
3127111312766
100.0000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.8080
95.5101
98.1417
64.0023
312714731165957
96.6102
gduggal-snapvardSNPtimap_l250_m2_e0het
82.6056
96.1278
72.4186
92.5288
31281263114118665
5.4806
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_diTR_11to50het
99.3508
99.3647
99.3369
68.1260
3128203146213
14.2857
jmaeng-gatkINDELD16_PLUS*het
97.5431
99.0503
96.0810
78.7734
312930289311885
72.0339
ckim-dragenINDELD16_PLUS*het
97.5880
99.0820
96.1385
80.1270
313029288811638
32.7586
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
96.8124
95.6628
97.9899
63.3939
313214231206461
95.3125